RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 VRK2Q86Y07 508 aa20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 ST8SIA1Q92185 356 aa20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 MRGPRX4Q96LA9 322 aa20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 RNF145Q96MT1 663 aa20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 HOPXQ9BPY8 73 aaPredicted RBP20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 ZNF443Q9Y2A4 671 aaPredicted RBP20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 GTF3C1Q12789 2109 aa20.87■□□□□ 0.93
SMARCB1-205ENST00000417137 DNAJC13O75165 2243 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 CLDN24A6NM45 220 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 H3BML4 177 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 EPPINO95925 133 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 PABPC4LP0CB38 370 aaKnown RBP20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 RAC1P63000 192 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 PMPCAQ10713 525 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 QPRTQ15274 297 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 RABL3Q5HYI8 236 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 RNF220Q5VTB9 566 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 PTOV1Q86YD1 416 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 CCDC197Q8NCU1 140 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 FBXO27Q8NI29 283 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 ZNF563Q8TA94 476 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 CNOT9Q92600 299 aaKnown RBP20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 RND1Q92730 232 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 TTYH2Q9BSA4 534 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 CALHM2Q9HA72 323 aa20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 DNAJB12Q9NXW2 375 aaKnown RBP20.86■□□□□ 0.93
SMARCB1-205ENST00000417137 CDHR4A6H8M9 788 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 PRORSD1PA6NEY8 169 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 SHISA8B8ZZ34 492 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 ZG16O60844 167 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 PRKCAP17252 672 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 ELK4P28324 431 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 RYKP34925 604 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 CLDN18P56856 261 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 EEF1A1P68104 462 aaKnown RBP20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 TOMM34Q15785 309 aaPredicted RBP20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 ACSF3Q4G176 576 aaPredicted RBP20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 SLC25A53Q5H9E4 307 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 INTS11Q5TA45 600 aaKnown RBP20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 HACD2Q6Y1H2 254 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 ZNF836Q6ZNA1 936 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 GRAMD2AQ8IUY3 354 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 UBQLNLQ8IYU4 475 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 BHLHE22Q8NFJ8 381 aaPredicted RBP20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 POC1BQ8TC44 478 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 KLHDC3Q9BQ90 382 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 COQ3Q9NZJ6 369 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 FAM215AQ9Y5M1 114 aa20.85■□□□□ 0.93
SMARCB1-205ENST00000417137 CFAP73A6NFT4 308 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 NDUFAB1O14561 156 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 AGAP20933 346 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 PSMA4P25789 261 aaKnown RBP20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 PRKAR1BP31321 381 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 RPS3AP61247 264 aaKnown RBP20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 FOXF1Q12946 379 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 RTL6Q6ICC9 239 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 ERICH5Q6P6B1 374 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 XKRXQ6PP77 449 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 ZNF550Q7Z398 422 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 LACC1Q8IV20 430 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 ZZZ3Q8IYH5 903 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 ZNF808Q8N4W9 903 aaPredicted RBP20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 OR10Q1Q8NGQ4 319 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 SMPDL3BQ92485 455 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 TRIB1Q96RU8 372 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 SERINC1Q9NRX5 453 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 ACER3Q9NUN7 267 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 RLIMQ9NVW2 624 aa20.84■□□□□ 0.93
SMARCB1-205ENST00000417137 CD8B2A6NJW9 211 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 GJE1A6NN92 205 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 ETV2O00321 342 aaPredicted RBP20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 BCAS1O75363 584 aaPredicted RBP20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 GLI4P10075 376 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 GP1BBP13224 206 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 PCGF2P35227 344 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 NUDT2P50583 147 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 GZMMP51124 257 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 SESN3P58005 492 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 VMACQ2NL98 169 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 PDSS1Q5T2R2 415 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 NSUN5P2Q63ZY6 315 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 MRGPRGQ86SM5 289 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 PATL1Q86TB9 770 aaKnown RBP20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 CALHM3Q86XJ0 350 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 SLC35B4Q969S0 331 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 REXO5Q96IC2 774 aaKnown RBP20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 TUBA1CQ9BQE3 449 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 GPATCH1Q9BRR8 931 aaKnown RBP20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 PIF1Q9H611 641 aa20.83■□□□□ 0.93
SMARCB1-205ENST00000417137 FAAHO00519 579 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 SEC14L5O43304 696 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 FREM3P0C091 2139 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 AQP1P29972 269 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 APOBEC1P41238 236 aaKnown RBP20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 HTR3AP46098 478 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 IDH2P48735 452 aaKnown RBP20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 NUP107P57740 925 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 ADORA2A-AS1P86434 159 aa20.82■□□□□ 0.92
SMARCB1-205ENST00000417137 FAM91A1Q658Y4 838 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms