RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PLA2G12AQ9BZM1 189 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 LAT2Q9GZY6 243 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 EGLN3Q9H6Z9 239 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF160Q9HCG1 818 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 RASSF1Q9NS23 344 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 C20orf141Q9NUB4 165 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 RPS6KB2Q9UBS0 482 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 FARSAQ9Y285 508 aaKnown RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 NSG1A0A0A6YYJ2 146 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 DPPA5A6NC42 116 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MASP2O00187 686 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 CDC42EP2O14613 210 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 NDUFB5O43674 189 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 OR2J2O76002 312 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 OR6B1O95007 311 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ANGPTL1O95841 491 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 LINGO3P0C6S8 592 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 F8A1P23610 371 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 CRHBPP24387 322 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 STAT5AP42229 794 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 LIMK1P53667 647 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 DNASE1L3Q13609 305 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 SLX4IPQ5VYV7 408 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 NDUFAF7Q7L592 441 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 IQCF1Q8N6M8 205 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 NLGN4YQ8NFZ3 816 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 M1APQ8TC57 530 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF426Q9BUY5 554 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MMP25Q9NPA2 562 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 KRCC1Q9NPI7 259 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ATP13A2Q9NQ11 1180 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF226Q9NYT6 803 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 EP300Q09472 2414 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MUC6Q6W4X9 2439 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 TERTO14746 1132 aaKnown RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 HCRTR2O43614 444 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 GMFGO60234 142 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 RAD1O60671 282 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 WBP4O75554 376 aaKnown RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 CLPTM1O96005 669 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 IFI30P13284 250 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 GABRB1P18505 474 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MAKP20794 623 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MST1P26927 711 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 DLSTP36957 453 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 COPZ1P61923 177 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 RPS15P62841 145 aaKnown RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 PRKCDQ05655 676 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 SMN1Q16637 294 aaKnown RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 C12orf73Q69YU5 71 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ULK3Q6PHR2 472 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 LINC00114Q6XXX2 140 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 RASSF6Q6ZTQ3 369 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 CCDC103Q8IW40 242 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 RNF113BQ8IZP6 322 aaKnown RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 OR8D4Q8NGM9 314 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 SLC22A8Q8TCC7 542 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 SGCDQ92629 289 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF566Q969W8 418 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 C3orf49Q96BT1 292 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MPP4Q96JB8 637 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 RASL10BQ96S79 203 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 DPH1Q9BZG8 443 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MEPEQ9NQ76 525 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-203ENST00000409458 MED31Q9Y3C7 131 aa12.86□□□□□ -0.35
GPNMB-203ENST00000409458 A6NHS1 94 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 GNB5O14775 395 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 XPNPEP2O43895 674 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 FBXO45P0C2W1 286 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 NAGAP17050 411 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 FUT1P19526 365 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 RBM34P42696 430 aaKnown RBP12.85□□□□□ -0.35
GPNMB-203ENST00000409458 HLCSP50747 726 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 CTBP2P56545 445 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 CDC42P60953 191 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 IL10RAQ13651 578 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 SSPNQ14714 243 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 WBP2NLQ6ICG8 309 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 ASCL5Q7RTU5 278 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 P3H2Q8IVL5 708 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 DEPDC4Q8N2C3 294 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 BPIFB6Q8NFQ5 453 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 RNF138Q8WVD3 245 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 HS6ST2Q96MM7 605 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 PAK1IP1Q9NWT1 392 aaPredicted RBP12.85□□□□□ -0.35
GPNMB-203ENST00000409458 IMPAD1Q9NX62 359 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 SELENONQ9NZV5 590 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 ICAM5Q9UMF0 924 aa12.85□□□□□ -0.35
GPNMB-203ENST00000409458 A0A087WXM4 84 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 LOC101059948A0A1B0GTJ6 334 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TRIM64CA6NLI5 447 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 C21orf140B9A014 251 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 PROB1E7EW31 1015 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 MAN1A2O60476 641 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 EIF4E2O60573 245 aaKnown RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TFAP2AP05549 437 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 CSRP1P21291 193 aaKnown RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 SLC6A8P48029 635 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TMED10P49755 219 aaKnown RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 ST13P50502 369 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms