RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MAMDC2Q7Z304 686 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 SPRED1Q7Z699 444 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 SLC2A13Q96QE2 648 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 AK1P00568 194 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF91Q05481 1191 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF789Q5FWF6 425 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 TP53INP2Q8IXH6 220 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF440Q8IYI8 595 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 YIPF5Q969M3 257 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 FBXL12Q9NXK8 326 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 EHFQ9NZC4 300 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 BCL9LQ86UU0 1499 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 METTL15A6NJ78 407 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 CD53P19397 219 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 PRDX3P30048 256 aaKnown RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 MRPL49Q13405 166 aaKnown RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ADPRMQ3LIE5 342 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 MEPCEQ7L2J0 689 aaKnown RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 TRMT2BQ96GJ1 504 aaKnown RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 RNF170Q96K19 258 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 C20orf85Q9H1P6 137 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 YIPF1Q9Y548 306 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ARHGEF28Q8N1W1 1705 aaKnown RBP11.15□□□□□ -0.63
SYNPO-202ENST00000394243 H7C1Q1 480 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 GPR39O43194 453 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 SMIM18P0DKX4 95 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 PNMTP11086 282 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 DAPP51397 102 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 INHBCP55103 352 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 PRPS1P60891 318 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 PLCXD2Q0VAA5 305 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 NLRC3Q7RTR2 1065 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 MIB2Q96AX9 1013 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 DHRS4Q9BTZ2 278 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 OR52A5Q9H2C5 316 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 DNAJC5Q9H3Z4 198 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 C1GALT1Q9NS00 363 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 SLAMF8Q9P0V8 285 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 GAB2Q9UQC2 676 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 PLIN4Q96Q06 1357 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 ADGRB1O14514 1584 aa11.15□□□□□ -0.63
SYNPO-202ENST00000394243 TRAV20A0A0B4J274 112 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 MBP02144 154 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TNFRSF17Q02223 184 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SLC22A6Q4U2R8 563 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 PODNL1Q6PEZ8 512 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 FBXW12Q6X9E4 464 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 RETREG3Q86VR2 466 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 PNPLA1Q8N8W4 532 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ARNTL2Q8WYA1 636 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 MRPL38Q96DV4 380 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ELF4Q99607 663 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 GSX2Q9BZM3 304 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TDP1Q9NUW8 608 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SHPRHQ149N8 1683 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 KDM4FA0A1W2PPD8 638 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 MSTNO14793 375 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 C1QBP02746 253 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SCG5P05408 212 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SBK2P0C263 348 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 FAM163BP0C2L3 166 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 AKR1C1Q04828 323 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 PLK5Q496M5 336 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 MRPL22Q9NWU5 206 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 KLK4Q9Y5K2 254 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 COL5A2P05997 1499 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM235A6NFC5 223 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ANKRD28O15084 1053 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TO15178 435 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 APEHP13798 732 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 RPS18P62269 152 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 OR52W1Q6IF63 320 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TRAPPC6BQ86SZ2 158 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 MCATQ8IVS2 390 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM239Q8WW34 195 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 CPNE7Q9UBL6 633 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 GRXCR2A6NFK2 248 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SOCS6O14544 535 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 OR13C7P0DN81 318 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TPGS2Q68CL5 300 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 KANSL1Q7Z3B3 1105 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 NAA40Q86UY6 237 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 FAM58AQ8N1B3 248 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ZFAND1Q8TCF1 268 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF689Q96CS4 500 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 HCAR1Q9BXC0 346 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 CWH43Q9H720 699 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 HRASLS2Q9NWW9 162 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 PSORS1C1Q9UIG5 152 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 USP22Q9UPT9 525 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 GALTP07902 379 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 GCAP28676 217 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 FLT3LGP49771 235 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 CLDN12P56749 244 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ADARB1P78563 741 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TLE4Q04727 773 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SPOCK1Q08629 439 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 LEXMQ3ZCV2 418 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms