RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DNAJA2O60884 412 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 PABPC4LP0CB38 370 aaKnown RBP19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 UFM1P61960 85 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 SKP2Q13309 424 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 CBFBQ13951 182 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 QPRTQ15274 297 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 ZNF239Q16600 458 aaKnown RBP19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 TMEM176BQ3YBM2 270 aaPredicted RBP19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 ATAD3BQ5T9A4 648 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 TNFAIP8L2Q6P589 184 aaPredicted RBP19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 ZNF550Q7Z398 422 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 SPATA19Q7Z5L4 167 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 TGIF2LYQ8IUE0 185 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 MGARPQ8TDB4 240 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 RNF128Q8TEB7 428 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 XAGE5Q8WWM1 108 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 OIT3Q8WWZ8 545 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 ROBO4Q8WZ75 1007 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 CPNE4Q96A23 557 aaPredicted RBP19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 TMUB1Q9BVT8 246 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 SRXN1Q9BYN0 137 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 KLHL4Q9C0H6 718 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 TRPC5OSA6NMA1 111 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 KIAA0513O60268 411 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 ERLIN1O75477 346 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 AGTR1P30556 359 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 CCR4P51679 360 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 NME5P56597 212 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 MAGOHP61326 146 aaKnown RBP19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 SELENBP1Q13228 472 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 EXOC3L2Q2M3D2 409 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 DEFB113Q30KQ7 82 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 TYW3Q6IPR3 259 aaKnown RBP19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 HEATR5AQ86XA9 2040 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 RAB3IL1Q8TBN0 382 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 ZFP90Q8TF47 636 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 RAB8BQ92930 207 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 TLCD1Q96CP7 247 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 MARK4Q96L34 752 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 SLC35A5Q9BS91 424 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 SAP130Q9H0E3 1048 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 WDR55Q9H6Y2 383 aaPredicted RBP19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 COQ10BQ9H8M1 238 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 POLE3Q9NRF9 147 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 GPR45Q9Y5Y3 372 aa19.38■□□□□ 0.69
CCDC28B-201ENST00000373602 GOLGA8QA0A0J9YX86 632 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 GOLGA8OA6NCC3 632 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 GOLGA8NF8WBI6 632 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 CSTAP01040 98 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 EPHA3P29320 983 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 IL12AP29459 219 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 CHI3L1P36222 383 aaPredicted RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 KHKP50053 298 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 RIPPLY3P57055 190 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 FUT5Q11128 374 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 RNPS1Q15287 305 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 MAPK14Q16539 360 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 BEND6Q5SZJ8 279 aaPredicted RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 ATG16L1Q676U5 607 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 C22orf34Q6ZV56 151 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 EIF3MQ7L2H7 374 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 ATP6V1C2Q8NEY4 427 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 ST8SIA1Q92185 356 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 ROPN1LQ96C74 230 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 REXO5Q96IC2 774 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 THUMPD3Q9BV44 507 aaKnown RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 TMBIM4Q9HC24 238 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 NKIRAS1Q9NYS0 192 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 MARCOQ9UEW3 520 aaPredicted RBP19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 WDR45Q9Y484 360 aa19.37■□□□□ 0.69
CCDC28B-201ENST00000373602 ITPR3Q14573 2671 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 SLCO1B7G3V0H7 640 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 CYP7B1O75881 506 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 PGRP06401 933 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 CD99P14209 185 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 CD53P19397 219 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 TIGD2Q4W5G0 525 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 ANKRD34AQ69YU3 496 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 STAC2Q6ZMT1 411 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 FRRS1Q6ZNA5 592 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 BEND4Q6ZU67 534 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 FCRLAQ7L513 359 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 ZNF619Q8N2I2 560 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 FAM71CQ8NEG0 241 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 ABHD3Q8WU67 409 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 PIK3IP1Q96FE7 263 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 ZC3HAV1LQ96H79 300 aaKnown RBP19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 MANSC1Q9H8J5 431 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 GP6Q9HCN6 339 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 FANCFQ9NPI8 374 aa19.36■□□□□ 0.69
CCDC28B-201ENST00000373602 PRAMEF27A3QJZ7 478 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 CCDC154A6NI56 674 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 C9JVG2 144 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 C1QCP02747 245 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 UBTFL6P0CB48 400 aaPredicted RBP19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 KITP10721 976 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 PPP3CBP16298 524 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 PGM1P36871 562 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 SESN3P58005 492 aa19.35■□□□□ 0.69
CCDC28B-201ENST00000373602 LRRC74AQ0VAA2 488 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms