RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 USP9XQ93008 2570 aaPredicted RBP14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 CDHR4A6H8M9 788 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 AHRRA9YTQ3 701 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 NDUFAB1O14561 156 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 SEC14L5O43304 696 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ZG16O60844 167 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 CPN1P15169 458 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 PRKCAP17252 672 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 PCGF2P35227 344 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 PTGER4P35408 488 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 EIF1P41567 113 aaKnown RBP14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 CPA2P48052 419 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 GZMMP51124 257 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ACSF3Q4G176 576 aaPredicted RBP14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 RTL6Q6ICC9 239 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 B3GNT6Q6ZMB0 384 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 CALHM3Q86XJ0 350 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 CLIP4Q8N3C7 705 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 MARVELD2Q8N4S9 558 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 MEIOBQ8N635 442 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF563Q8TA94 476 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF524Q96C55 264 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF607Q96SK3 696 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 GPATCH1Q9BRR8 931 aaKnown RBP14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 SPATA5L1Q9BVQ7 753 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 ARMC7Q9H6L4 198 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 TMEM185BQ9H7F4 350 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 AP4B1Q9Y6B7 739 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 MED12Q93074 2177 aa14.35□□□□□ -0.11
CCDC28A-201ENST00000332797 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 CCT8L1PA6NM43 557 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 AP3D1O14617 1153 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 DNAJA2O60884 412 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ADAM11O75078 769 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 HOXD4P09016 255 aaPredicted RBP14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ME2P23368 584 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 PSMA4P25789 261 aaKnown RBP14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 SLC6A8P48029 635 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 CLDN20P56880 219 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ADORA2A-AS1P86434 159 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 SF3B4Q15427 424 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 BCL2A1Q16548 175 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 VMACQ2NL98 169 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 TMEM211Q6ICI0 200 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 RPTNQ6XPR3 784 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 HACD2Q6Y1H2 254 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ARPINQ7Z6K5 226 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 SLC30A8Q8IWU4 369 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 BCAS4Q8TDM0 211 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 PHF10Q8WUB8 498 aaKnown RBP14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ST8SIA1Q92185 356 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 MRGPRX4Q96LA9 322 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 TRIB1Q96RU8 372 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 HOPXQ9BPY8 73 aaPredicted RBP14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 TUBA1CQ9BQE3 449 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 ARL8BQ9NVJ2 186 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 TAGLN3Q9UI15 199 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 USP22Q9UPT9 525 aa14.34□□□□□ -0.11
CCDC28A-201ENST00000332797 CFAP73A6NFT4 308 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 KDM4EB2RXH2 506 aaPredicted RBP14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 H0YC42 278 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 SERPINB7O75635 380 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 OPN1LWP04000 364 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 GKN3PP0CG01 181 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 GLI4P10075 376 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 IL11P20809 199 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ELK4P28324 431 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ADH6P28332 368 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 PRKAR1BP31321 381 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC7A2P52569 658 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 TPD52P55327 224 aaPredicted RBP14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 PCBP3P57721 371 aaKnown RBP14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 NUP107P57740 925 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 SESN3P58005 492 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 PMPCAQ10713 525 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 EPS8Q12929 822 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ZSWIM7Q19AV6 140 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 SLC25A53Q5H9E4 307 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 FAM91A1Q658Y4 838 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 POMZP3Q6PJE2 187 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ARMC8Q8IUR7 673 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 GRAMD2AQ8IUY3 354 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ZNF440Q8IYI8 595 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 FITM2Q8N6M3 262 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ZPLD1Q8TCW7 415 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 TMEM234Q8WY98 164 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 REXO5Q96IC2 774 aaKnown RBP14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ZNF583Q96ND8 569 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 TTYH2Q9BSA4 534 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 ACER3Q9NUN7 267 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 CMTM6Q9NX76 183 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 STOML1Q9UBI4 398 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 CHST2Q9Y4C5 530 aa14.33□□□□□ -0.12
CCDC28A-201ENST00000332797 PRORSD1PA6NEY8 169 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 CLCA1A8K7I4 914 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 FAM220BPB1ANY3 271 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 EIF1AYO14602 144 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 FRS3O43559 492 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 NTN1O95631 604 aa14.32□□□□□ -0.12
CCDC28A-201ENST00000332797 OPN1SWP03999 348 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms