RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LYSMD1Q96S90 227 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ADAM11O75078 769 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 THY1P04216 161 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 DCTDP32321 178 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 GCGRP47871 477 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 HES5Q5TA89 166 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 ZDHHC20Q5W0Z9 365 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 HEPHL1Q6MZM0 1159 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 TMEM220Q6QAJ8 160 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 SSX6Q7RTT6 188 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 RGMAQ96B86 450 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 ACTR6Q9GZN1 396 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 SYNDIG1Q9H7V2 258 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 EQTNQ9NQ60 294 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 PRDM9Q9NQV7 894 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 CXXC1Q9P0U4 656 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 MYO15AQ9UKN7 3530 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 TMPRSS11DO60235 418 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 C1orf105O95561 183 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 WDPCPO95876 746 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 TGM6O95932 706 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 EPXP11678 715 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 MAOBP27338 520 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 RAG2P55895 527 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 CLDN2P57739 230 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 DCAF12L2Q5VW00 463 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 OR7E24Q6IFN5 339 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 NXPE4Q6UWF7 544 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 GSG1LQ6UXU4 331 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 STK35Q8TDR2 534 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC35G5Q96KT7 338 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 TINAGL1Q9GZM7 467 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 FKRPQ9H9S5 495 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 TRIM36Q9NQ86 728 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 MARCH5Q9NX47 278 aa12.5□□□□□ -0.41
CCDC88C-201ENST00000331194 OR2M5A3KFT3 312 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 SSX5O60225 188 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 CKMP06732 381 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 FLI1Q01543 452 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 METTL11BQ5VVY1 283 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 TXNDC8Q6A555 127 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 CYB561A3Q8NBI2 242 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 PXYLP1Q8TE99 480 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 SMIM4Q8WVI0 70 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 AHCYL2Q96HN2 611 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 MYO9BQ13459 2157 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 ZGLP1P0C6A0 271 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 C8orf89P0DMQ9 161 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 ACHEP22303 614 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 NOS3P29474 1203 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 GDI2P50395 445 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 PCBP4P57723 403 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 RPS15P62841 145 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 SHC2P98077 582 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 FUT10Q6P4F1 479 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 GLDNQ6ZMI3 551 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 DEFB128Q7Z7B8 93 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 FBXO22Q8NEZ5 403 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 MACROD1Q9BQ69 325 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 UBQLN3Q9H347 655 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 STARD7Q9NQZ5 370 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 MED9Q9NWA0 146 aa12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 KLF2Q9Y5W3 355 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-201ENST00000331194 RAB19A4D1S5 217 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 CDHR4A6H8M9 788 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 H0YC42 278 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 SMAD9O15198 467 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 YKT6O15498 198 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 KHDRBS3O75525 346 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ATG12O94817 140 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF35P13682 527 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC11A1P49279 550 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PITPNAQ00169 270 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 MC2RQ01718 297 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 GK2Q14410 553 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 Q6ZVU0 165 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ARL14Q8N4G2 192 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 BPIFCQ8NFQ6 507 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PIGXQ8TBF5 258 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PGLYRP3Q96LB9 341 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 EFCAB11Q9BUY7 163 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 GLIPR2Q9H4G4 154 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 MLXQ9UH92 298 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC5A10A0PJK1 596 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 SERPIND1P05546 499 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PPP2R1BP30154 601 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 DHODHQ02127 395 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF311Q5JNZ3 666 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HSD17B13Q7Z5P4 300 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 RNF180Q86T96 592 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 C2CD4CQ8TF44 421 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 OSTF1Q92882 214 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 DEFB118Q96PH6 123 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ANKRD19PQ9H560 264 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 MOKQ9UQ07 419 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 CAMK2AQ9UQM7 478 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ENTPD4Q9Y227 616 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 CACNA1CQ13936 2221 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 TMEM189-UBE2V1I3L0A0 370 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms