RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MAP3K3Q99759 626 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 ORAI3Q9BRQ5 295 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 PCDH15Q96QU1 1955 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 A0A0B4J2E0 115 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 A0A1B0GX12 115 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 FABP12A6NFH5 140 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 CASP3P42574 277 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 RPS7P62081 194 aaKnown RBP18.53■□□□□ 0.56
VPS53-201ENST00000291074 BTG2P78543 158 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 NDUFAF6Q330K2 333 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 ARMC4Q5T2S8 1044 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 PARGQ86W56 976 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 SLC37A3Q8NCC5 494 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 RIT1Q92963 219 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 KLHDC7BQ96G42 594 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 ABHD8Q96I13 439 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 ZNF559Q9BR84 538 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 ALG8Q9BVK2 526 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 DNAJB12Q9NXW2 375 aaKnown RBP18.53■□□□□ 0.56
VPS53-201ENST00000291074 WSB2Q9NYS7 404 aaPredicted RBP18.53■□□□□ 0.56
VPS53-201ENST00000291074 A8MU76 341 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 FOXS1O43638 330 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 PPP1R3DO95685 299 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 IL9P15248 144 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 TMED10P49755 219 aaKnown RBP18.53■□□□□ 0.56
VPS53-201ENST00000291074 ZNF613Q6PF04 617 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 NPSR1Q6W5P4 371 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 CDK20Q8IZL9 346 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 ACBD7Q8N6N7 88 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 NEIL3Q8TAT5 605 aa18.53■□□□□ 0.56
VPS53-201ENST00000291074 HOXB13Q92826 284 aaPredicted RBP18.53■□□□□ 0.56
VPS53-201ENST00000291074 RCBTB2O95199 551 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 IGLV3-19P01714 112 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 ACAA2P42765 397 aaKnown RBP18.52■□□□□ 0.56
VPS53-201ENST00000291074 STX4Q12846 297 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 OR10H4Q8NGA5 316 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 CMC2Q9NRP2 79 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 MALT1Q9UDY8 824 aa18.52■□□□□ 0.56
VPS53-201ENST00000291074 A0A1W2PPC4 97 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 PRKNO60260 465 aaPredicted RBP18.52■□□□□ 0.55
VPS53-201ENST00000291074 HLA-DPB1P04440 258 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 GYPBP06028 91 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 HOXD12P35452 270 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 COPZ1P61923 177 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 DAB2P98082 770 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 ZNF267Q14586 743 aaPredicted RBP18.52■□□□□ 0.55
VPS53-201ENST00000291074 PRTGQ2VWP7 1150 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 TMEM91Q6ZNR0 172 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 CADM2Q8N3J6 435 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 FAM181AQ8N9Y4 354 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 VSTM2LQ96N03 204 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 TNFRSF13CQ96RJ3 184 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 LMF2Q9BU23 707 aaKnown RBP18.52■□□□□ 0.55
VPS53-201ENST00000291074 FN3KQ9H479 309 aa18.52■□□□□ 0.55
VPS53-201ENST00000291074 PRR23D1E9PI22 279 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 HRO43593 1189 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 CHP2O43745 196 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 TMCC2O75069 709 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 CSF3P09919 207 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 PRR23D2P0DMB1 279 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 MAOAP21397 527 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 PPM1FP49593 454 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 ACSM1Q08AH1 577 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 CRMP1Q14194 572 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 ZNF362Q5T0B9 420 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 RBM18Q96H35 190 aaKnown RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 GDF15Q99988 308 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 TMEM5Q9Y2B1 443 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 FAM86C2PA6NEL3 165 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 CCDC182A6NF36 153 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 RNH1P13489 461 aaKnown RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 ZNHIT3Q15649 155 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 ALG10BQ5I7T1 473 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 RCBTB1Q8NDN9 531 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 DNAJA4Q8WW22 397 aaPredicted RBP18.51■□□□□ 0.55
VPS53-201ENST00000291074 JAM3Q9BX67 310 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 POLE3Q9NRF9 147 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 C14orf105Q9NVL8 296 aa18.51■□□□□ 0.55
VPS53-201ENST00000291074 HPGDSO60760 199 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 ZNF24P17028 368 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 PGDP52209 483 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 NKX2-5P52952 324 aaPredicted RBP18.5■□□□□ 0.55
VPS53-201ENST00000291074 CTBP2P56545 445 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 OAFQ86UD1 273 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 SETD6Q8TBK2 473 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 CLDN16Q9Y5I7 305 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 DAPL1A0PJW8 107 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 E9PI62 339 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 POLR1CO15160 346 aaPredicted RBP18.5■□□□□ 0.55
VPS53-201ENST00000291074 PTP4A3O75365 173 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 CRYZQ08257 329 aaKnown RBP18.5■□□□□ 0.55
VPS53-201ENST00000291074 PYDC2Q56P42 97 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 AP3S1Q92572 193 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 TEAD3Q99594 435 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 RNF32Q9H0A6 362 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 ZNF576Q9H609 170 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 POU2F3Q9UKI9 436 aa18.5■□□□□ 0.55
VPS53-201ENST00000291074 RNF13O43567 381 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 WNT1P04628 370 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 OR2B6P58173 313 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms