RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 A0A1B0GX12 115 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 GTPBP1O00178 669 aaKnown RBP16.88■□□□□ 0.29
CLN3-254ENST00000637050 ADAM10O14672 748 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 OIP5O43482 229 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 OR10H3O60404 316 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ADAP00813 363 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 GNAO1P09471 354 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ITGAMP11215 1152 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 Q0VFX4 171 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 PDK3Q15120 406 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 TTC23Q5W5X9 447 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 PGBD2Q6P3X8 592 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ACOT11Q8WXI4 607 aaPredicted RBP16.88■□□□□ 0.29
CLN3-254ENST00000637050 TMCO6Q96DC7 493 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 NODALQ96S42 347 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 DGCR6LQ9BY27 220 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 LAT2Q9GZY6 243 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ZNF556Q9HAH1 456 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 UBAP1Q9NZ09 502 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 CARD8Q9Y2G2 431 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 A0A1B0GWA3 101 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 MASP2O00187 686 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 SLC16A6O15403 523 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 NDUFB5O43674 189 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 ITGA10O75578 1167 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 RPSAP08865 295 aaKnown RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 MYF6P23409 242 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 POLR2IP36954 125 aaKnown RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 IL1RL1Q01638 556 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 CHAF1BQ13112 559 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 CAMK2BQ13554 666 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 CBLN3Q6UW01 205 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 APLFQ8IW19 511 aaPredicted RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 PARP8Q8N3A8 854 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 ZNF555Q8NEP9 628 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 GRHL3Q8TE85 626 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 NR1H4Q96RI1 486 aaPredicted RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 GABARAPL3Q9BY60 117 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 GRIP2Q9C0E4 1043 aa16.87■□□□□ 0.29
CLN3-254ENST00000637050 RYDENQ9NUL5 291 aaKnown RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 YARS2Q9Y2Z4 477 aaKnown RBP16.87■□□□□ 0.29
CLN3-254ENST00000637050 FAM186AA6NE01 2351 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 E9PQ18 207 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 EIF4E2O60573 245 aaKnown RBP16.86■□□□□ 0.29
CLN3-254ENST00000637050 NTN1O95631 604 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 ANGPTL1O95841 491 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 RYKP34925 604 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 LSM11P83369 360 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLN3-254ENST00000637050 ZNF117Q03924 483 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 RTP5Q14D33 572 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 NTRK2Q16620 822 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 ZNF791Q3KP31 576 aaPredicted RBP16.86■□□□□ 0.29
CLN3-254ENST00000637050 C1orf94Q6P1W5 598 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 ZNF730Q6ZMV8 503 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 ZER1Q7Z7L7 766 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 OR5M3Q8NGP4 307 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 TMEM255BQ8WV15 326 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 GTPBP3Q969Y2 492 aaKnown RBP16.86■□□□□ 0.29
CLN3-254ENST00000637050 SPACA9Q96E40 222 aaPredicted RBP16.86■□□□□ 0.29
CLN3-254ENST00000637050 RIBC2Q9H4K1 309 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 GPN2Q9H9Y4 310 aaPredicted RBP16.86■□□□□ 0.29
CLN3-254ENST00000637050 CFAP54Q96N23 3096 aa16.86■□□□□ 0.29
CLN3-254ENST00000637050 LOC100130705A0A1B0GUX0 176 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 CHP2O43745 196 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 SLC34A2O95436 690 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 CLIC3O95833 236 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 SERPINA7P05543 415 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 LINGO3P0C6S8 592 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 LIPCP11150 499 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 POU2F1P14859 743 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 MLF1P58340 268 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 NPRL3Q12980 569 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 ATP1A4Q13733 1029 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 RSPO4Q2I0M5 234 aaPredicted RBP16.85■□□□□ 0.29
CLN3-254ENST00000637050 H3F3CQ6NXT2 135 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 KLHL17Q6TDP4 642 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 WDR88Q6ZMY6 472 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 RPS19BP1Q86WX3 136 aaKnown RBP16.85■□□□□ 0.29
CLN3-254ENST00000637050 KIAA1143Q96AT1 154 aaPredicted RBP16.85■□□□□ 0.29
CLN3-254ENST00000637050 IP6K3Q96PC2 410 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 CDCP1Q9H5V8 836 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 PCDHGB5Q9Y5G0 923 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 SCO2O43819 266 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 MAN1A2O60476 641 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 IFNGR2P38484 337 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 SOX3P41225 446 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 CLK3P49761 638 aaKnown RBP16.85■□□□□ 0.29
CLN3-254ENST00000637050 UGT2B15P54855 530 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 TGIF1Q15583 401 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 ULK3Q6PHR2 472 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 OPN5Q6U736 354 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 UGT2A3Q6UWM9 527 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 CD300LDQ6UXZ3 194 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 MBOAT2Q6ZWT7 520 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 MISPQ8IVT2 679 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 UCK2Q9BZX2 261 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 ICAM5Q9UMF0 924 aa16.85■□□□□ 0.29
CLN3-254ENST00000637050 HCRTR2O43614 444 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 EPHA2P29317 976 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 SLC6A8P48029 635 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms