RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NRG3P56975 720 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 ALDH6A1Q02252 535 aaKnown RBP15.48■□□□□ 0.07
CLN3-252ENST00000636907 EIF3IQ13347 325 aaKnown RBP15.48■□□□□ 0.07
CLN3-252ENST00000636907 CADM2Q8N3J6 435 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 OR8K3Q8NH51 312 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 APH1BQ8WW43 257 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 FOXJ2Q9P0K8 574 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 PCDHGA3Q9Y5H0 932 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 HS3ST3B1Q9Y662 390 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 IGHV1-45A0A0A0MS14 117 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 WWP2O00308 870 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 SLC1A7O00341 560 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 CHP2O43745 196 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 ANGPTL1O95841 491 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 FMO3P31513 532 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 HLCSP50747 726 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 TSPAN31Q12999 210 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 SKP2Q13309 424 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 C3orf38Q5JPI3 329 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 KIRREL2Q6UWL6 708 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 KIF18BQ86Y91 864 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 ZNF440Q8IYI8 595 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 POGLUT1Q8NBL1 392 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 OR5L2Q8NGL0 311 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 CT55Q8WUE5 264 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 TMEM239Q8WW34 195 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 RTN4RQ9BZR6 473 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 ZNF700Q9H0M5 742 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 DSN1Q9H410 356 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 POLR1BQ9H9Y6 1135 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 ZBTB20Q9HC78 741 aaPredicted RBP15.47■□□□□ 0.07
CLN3-252ENST00000636907 CARD8Q9Y2G2 431 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 NPFFR2Q9Y5X5 522 aa15.47■□□□□ 0.07
CLN3-252ENST00000636907 A0A087WXM4 84 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 OR6C70A6NIJ9 312 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 TRIM64CA6NLI5 447 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 ZNF264O43296 627 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 KLF4O43474 513 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 WBP4O75554 376 aaKnown RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 PPM1BO75688 479 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 ZFAND5O76080 213 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 NADKO95544 446 aaPredicted RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 NGFRP08138 427 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 COX6A1P12074 109 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 FPR3P25089 353 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 GPR4P46093 362 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 TUBA4AP68366 448 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 TOP3AQ13472 1001 aaPredicted RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 CBLN3Q6UW01 205 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 MARCH3Q86UD3 253 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 DEPDC4Q8N2C3 294 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 BPIFB6Q8NFQ5 453 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 PFN4Q8NHR9 129 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 WDR36Q8NI36 951 aaKnown RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 ZNF566Q969W8 418 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 EXOSC3Q9NQT5 275 aaKnown RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 TUBA8Q9NY65 449 aaPredicted RBP15.46■□□□□ 0.07
CLN3-252ENST00000636907 ZNF226Q9NYT6 803 aa15.46■□□□□ 0.07
CLN3-252ENST00000636907 A0A1W2PQD3 144 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 ALG1L2C9J202 215 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 M0R129 80 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 GTPBP1O00178 669 aaKnown RBP15.45■□□□□ 0.06
CLN3-252ENST00000636907 XPNPEP2O43895 674 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 TCN2P20062 427 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 CCR4P51679 360 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 SMN1Q16637 294 aaKnown RBP15.45■□□□□ 0.06
CLN3-252ENST00000636907 BTBD16Q32M84 506 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 ALG10BQ5I7T1 473 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 SLX4IPQ5VYV7 408 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 RNF113BQ8IZP6 322 aaKnown RBP15.45■□□□□ 0.06
CLN3-252ENST00000636907 RHOXF1Q8NHV9 184 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 ELP5Q8TE02 316 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 SGCDQ92629 289 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 PLA2G12AQ9BZM1 189 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 EGLN3Q9H6Z9 239 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 RPS6KB2Q9UBS0 482 aa15.45■□□□□ 0.06
CLN3-252ENST00000636907 C17orf51A8MQB3 221 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 KPNA4O00629 521 aaPredicted RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 FADS1O60427 444 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 DKK1O94907 266 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 OR6B1O95007 311 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CELA2AP08217 269 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CD63P08962 238 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 LINGO3P0C6S8 592 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CCDC159P0C7I6 412 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CDK4P11802 303 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 GABRB1P18505 474 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 EEF1B2P24534 225 aaKnown RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 EVI2BP34910 448 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 RPL5P46777 297 aaKnown RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 CDC42P60953 191 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CXCR4P61073 352 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 COPZ1P61923 177 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 RPS18P62269 152 aaKnown RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 TMEM164Q5U3C3 297 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 ULK3Q6PHR2 472 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 LINC00114Q6XXX2 140 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 RASSF6Q6ZTQ3 369 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CCDC103Q8IW40 242 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 IQCF1Q8N6M8 205 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms