RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PINLYPA6NC86 204 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 ANKUB1A6NFN9 424 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 LRRC3CA6NJW4 275 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 B4DXG7 233 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 M0R3H8 397 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 FAAHO00519 579 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 GNB5O14775 395 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 FRS3O43559 492 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 FMO6PO60774 539 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 CBR3O75828 277 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 GKN3PP0CG01 181 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 PSMA4P25789 261 aaKnown RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 OR1E2P47887 323 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 SLC6A8P48029 635 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 MEOX1P50221 254 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 RGS8P57771 180 aaPredicted RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 CHRNB3Q05901 458 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 EPS8Q12929 822 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 CBFBQ13951 182 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 FAM98BQ52LJ0 330 aaKnown RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 RPUSD3Q6P087 351 aaKnown RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 LACC1Q8IV20 430 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 C10orf67Q8IYJ2 551 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 TMCO5AQ8N6Q1 288 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 EXD3Q8N9H8 876 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 ZFP62Q8NB50 900 aaPredicted RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 FAM98AQ8NCA5 519 aaKnown RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 OR2M3Q8NG83 312 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 OR4K17Q8NGC6 315 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 OR4D11Q8NGI4 311 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 OR6T1Q8NGN1 323 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 CANT1Q8WVQ1 401 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 SLC47A1Q96FL8 570 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 DUS3LQ96G46 650 aaKnown RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 JSRP1Q96MG2 331 aaPredicted RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 DSN1Q9H410 356 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 PTGES2Q9H7Z7 377 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 ZNF71Q9NQZ8 489 aaPredicted RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 CCM2LQ9NUG4 571 aaPredicted RBP13.07□□□□□ -0.32
UPF1-211ENST00000600868 ANAPC2Q9UJX6 822 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 HRH3Q9Y5N1 445 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 V9GYQ6 96 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 ADAM11O75078 769 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 GLSO94925 669 aaPredicted RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 IFNW1P05000 195 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 LINGO3P0C6S8 592 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 PRG2P13727 222 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 UQCRBP14927 111 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 TNFRSF1BP20333 461 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 CCR4P51679 360 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 NPTX1Q15818 432 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 HYAL4Q2M3T9 481 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 PLEKHN1Q494U1 663 aaPredicted RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 RANBP3LQ86VV4 465 aaPredicted RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 VANGL1Q8TAA9 524 aaPredicted RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 GPR119Q8TDV5 335 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 C1GALT1C1Q96EU7 318 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 DTNBP1Q96EV8 351 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 WBP1Q96G27 269 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 RSRC1Q96IZ7 334 aaKnown RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 C7orf34Q96L11 122 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 GNRHR2Q96P88 292 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 SEPHS2Q99611 448 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 ZNF559Q9BR84 538 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 AMBRA1Q9C0C7 1298 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 IL1RAPQ9NPH3 570 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 TESQ9UGI8 421 aaKnown RBP13.06□□□□□ -0.32
UPF1-211ENST00000600868 FBXL2Q9UKC9 423 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 C15orf41Q9Y2V0 281 aa13.06□□□□□ -0.32
UPF1-211ENST00000600868 USP24Q9UPU5 2620 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 A0A087WZY1 265 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 AP3D1O14617 1153 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 TPST2O60704 377 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 RAP2AP10114 183 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 ITGA2P17301 1181 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 PGCP20142 388 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 SLC7A1P30825 629 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 RYKP34925 604 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 MAGEA2P43356 314 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 ERFP50548 548 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 DSCR4P56555 118 aaPredicted RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 VLDLRP98155 873 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 GANABQ14697 944 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 INAQ16352 499 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 SLC6A19Q695T7 634 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 PIWIL3Q7Z3Z3 882 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 TSEN54Q7Z6J9 526 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 RBM45Q8IUH3 476 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 LSMEM1Q8N8F7 131 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 PAPD5Q8NDF8 572 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 PHF10Q8WUB8 498 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 PNPLA2Q96AD5 504 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 MCHR1Q99705 422 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 MFRPQ9BY79 579 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 TTTY12Q9BZ98 90 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 TRIM2Q9C040 744 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 POLR2J2Q9GZM3 115 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 POLR2J3Q9H1A7 115 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 SLC25A18Q9H1K4 315 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms