RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GPC6Q9Y625 555 aaPredicted RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 UTP20O75691 2785 aaKnown RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 SPTBN1Q01082 2364 aaKnown RBP13.57□□□□□ -0.24
UPF1-202ENST00000594243 TRBV5-3A0A0A0MS03 114 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 CENPVL1A0A0U1RR11 272 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 GMNCA6NCL1 334 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 HSPB2A8KAH6 182 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 SLC22A2O15244 555 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 CCDC22O60826 627 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 IL2RAP01589 272 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 GPX2P18283 190 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 LSP1P33241 339 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 PGM1P36871 562 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 RPS3AP61247 264 aaKnown RBP13.57□□□□□ -0.24
UPF1-202ENST00000594243 RAC1P63000 192 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 SKP2Q13309 424 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 HSPB2Q16082 182 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 MMEL1Q495T6 779 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 PRAMEF8Q5VWM4 474 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 PRAMEF7Q5VXH5 474 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 CPLX4Q7Z7G2 160 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 DHDDSQ86SQ9 333 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 UBQLNLQ8IYU4 475 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 WDR60Q8WVS4 1066 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 TMEM234Q8WY98 164 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 TUBA1CQ9BQE3 449 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 THUMPD3Q9BV44 507 aaKnown RBP13.57□□□□□ -0.24
UPF1-202ENST00000594243 QRSL1Q9H0R6 528 aaKnown RBP13.57□□□□□ -0.24
UPF1-202ENST00000594243 CACYBPQ9HB71 228 aaKnown RBP13.57□□□□□ -0.24
UPF1-202ENST00000594243 A4GALTQ9NPC4 353 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 ZNF232Q9UNY5 417 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 SVILO95425 2214 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 GTF3C1Q12789 2109 aa13.57□□□□□ -0.24
UPF1-202ENST00000594243 POLEQ07864 2286 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 A0A0G2JNJ9 132 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 MBD3L4A6NDZ8 208 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 MBD3L3A6NE82 208 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 MBD3L5A6NJ08 208 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 BBIP1A8MTZ0 92 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 SHISA8B8ZZ34 492 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 C5orf58C9J3I9 102 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 PRSS44E7EML9 344 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 OIP5O43482 229 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 NPPAP01160 153 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 UBTFL6P0CB48 400 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 PGCP20142 388 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 ME2P23368 584 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 CCR4P51679 360 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 SEC24CP53992 1094 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 NFYCQ13952 458 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 MAPK11Q15759 364 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 ZSWIM7Q19AV6 140 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 NDUFAF6Q330K2 333 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 COQ5Q5HYK3 327 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 SEM1Q6ZVN7 128 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 SPATA21Q7Z572 469 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 ADGRE4PQ86SQ3 457 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 RETREG3Q86VR2 466 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 OR52P1PQ8NH57 321 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 LILRB4Q8NHJ6 448 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 MBD3L2Q8NHZ7 208 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 TMEM19Q96HH6 336 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 MRGPRX4Q96LA9 322 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 RNF145Q96MT1 663 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 ANKRD27Q96NW4 1050 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 CGREF1Q99674 301 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 TM9SF2Q99805 663 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 TREX2Q9BQ50 279 aaPredicted RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 ELAC2Q9BQ52 826 aaKnown RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 ARMC7Q9H6L4 198 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 CHST11Q9NPF2 352 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 EXOSC3Q9NQT5 275 aaKnown RBP13.56□□□□□ -0.24
UPF1-202ENST00000594243 Q9UFV3 132 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 IFT52Q9Y366 437 aa13.56□□□□□ -0.24
UPF1-202ENST00000594243 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 CLCA1A8K7I4 914 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SEC14L5O43304 696 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 DNAJA2O60884 412 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 TOXO94900 526 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 NUDT7P0C024 238 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 NID1P14543 1247 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 PRKCAP17252 672 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 RPS4Y1P22090 263 aaKnown RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 PSMA4P25789 261 aaKnown RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 ELK4P28324 431 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 HTR1EP28566 365 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 CEACAM8P31997 349 aaPredicted RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 SLC6A8P48029 635 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SUCLG1P53597 346 aaKnown RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 CYLC2Q14093 348 aaPredicted RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 LARS2Q15031 903 aaKnown RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 QPRTQ15274 297 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SGCBQ16585 318 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 LIN52Q52LA3 116 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SLC25A53Q5H9E4 307 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 PDSS1Q5T2R2 415 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 GCNT6Q5T4J0 391 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 HMGN2P46Q86SG4 172 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 CCDC71Q8IV32 467 aaPredicted RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 PCYOX1LQ8NBM8 494 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms