RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RRADP55042 308 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 COPZ1P61923 177 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF117Q03924 483 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RFX4Q33E94 735 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 ACER2Q5QJU3 275 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 KDM4DQ6B0I6 523 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 PODNL1Q6PEZ8 512 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 IL20RBQ6UXL0 311 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 TMCO5AQ8N6Q1 288 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SIRT6Q8N6T7 355 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 CLEC1AQ8NC01 280 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 OR10G3Q8NGC4 313 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SLC7A13Q8TCU3 470 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 DUSP19Q8WTR2 217 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 PSMF1Q92530 271 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 FGF11Q92914 225 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RDH12Q96NR8 316 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 FEVQ99581 238 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SCNM1Q9BWG6 230 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 OSBPL11Q9BXB4 747 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RTN4RQ9BZR6 473 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 LHPPQ9H008 270 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SDHAF3Q9NRP4 125 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SMPD3Q9NY59 655 aaPredicted RBP12.52□□□□□ -0.41
CCDC40-209ENST00000573474 KIF17Q9P2E2 1029 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RPS6KB2Q9UBS0 482 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 TEKT2Q9UIF3 430 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 RAB26Q9ULW5 256 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 SLC7A7Q9UM01 511 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 WASF3Q9UPY6 502 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 PCSK5Q92824 1860 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 NINQ8N4C6 2090 aa12.52□□□□□ -0.41
CCDC40-209ENST00000573474 A0A0B4J2E0 115 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 A0A1B0GWA3 101 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 A0A1B0GX12 115 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF891A8MT65 544 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 DLGAP1O14490 977 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ADAM10O14672 748 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 NKX2-8O15522 239 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 LYPD3O95274 346 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 THY1P04216 161 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ACADSP16219 412 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SPINK2P20155 84 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 IGFBP5P24593 272 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ITGA3P26006 1051 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 P2RX1P51575 399 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 RAD23AP54725 363 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 GAS1P54826 345 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 C17orf67Q0P5P2 114 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SNTA1Q13424 505 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SEC23BQ15437 767 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 TAF11Q15544 211 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 CRTC2Q53ET0 693 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 NHSL2Q5HYW2 709 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 B3GNTL1Q67FW5 361 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ANKRD34AQ69YU3 496 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF770Q6IQ21 691 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 TMEM81Q6P7N7 255 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 CBLN3Q6UW01 205 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 GPALPP1Q8IXQ4 340 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 OR5W2Q8NH69 310 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 B4GALNT2Q8NHY0 566 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 DNAJA4Q8WW22 397 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ACOT11Q8WXI4 607 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SH3YL1Q96HL8 342 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SGCZQ96LD1 299 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 Q9H521 79 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 METTL7AQ9H8H3 244 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF556Q9HAH1 456 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 HPF1Q9NWY4 346 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 KLRF1Q9NZS2 232 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 SELENONQ9NZV5 590 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 TMEFF2Q9UIK5 374 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 MGAT4BQ9UQ53 548 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 MSRB2Q9Y3D2 182 aa12.51□□□□□ -0.41
CCDC40-209ENST00000573474 CHCHD2Q9Y6H1 151 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-209ENST00000573474 A0A087WUU8 490 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CHP2O43745 196 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 OR10H3O60404 316 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SNAP29O95721 258 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CDH2P19022 906 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 PGCP20142 388 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CBLP22681 906 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ITPKBP27987 946 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 MSX1P28360 303 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 IFNGR2P38484 337 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CASP3P42574 277 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 IDH2P48735 452 aaKnown RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 HLCSP50747 726 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CCR4P51679 360 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SOX8P57073 446 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SRSF6Q13247 344 aaKnown RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CBFBQ13951 182 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SWT1Q5T5J6 900 aaKnown RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ATP1A1-AS1Q5TC04 95 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 WBP2NLQ6ICG8 309 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SLC30A6Q6NXT4 461 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ULK3Q6PHR2 472 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF730Q6ZMV8 503 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 RTL4Q6ZR62 310 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms