RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TBK1Q9UHD2 729 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 DCDC2Q9UHG0 476 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 CLEC4AQ9UMR7 237 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PROCRQ9UNN8 238 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 VDAC3Q9Y277 283 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 STK38LQ9Y2H1 464 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 WBP11Q9Y2W2 641 aaKnown RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 FBN3Q75N90 2809 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 STAB1Q9NY15 2570 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MALRD1Q5VYJ5 2156 aa6□□□□□ -1.45
VPS53-213ENST00000572334 MXRA5Q9NR99 2828 aa6□□□□□ -1.45
VPS53-213ENST00000572334 A0A1W2PRB8 838 aa6□□□□□ -1.45
VPS53-213ENST00000572334 C7orf72A4D263 438 aa6□□□□□ -1.45
VPS53-213ENST00000572334 DPPA5A6NC42 116 aa6□□□□□ -1.45
VPS53-213ENST00000572334 EIF1AYO14602 144 aaKnown RBP6□□□□□ -1.45
VPS53-213ENST00000572334 TNFSF11O14788 317 aa6□□□□□ -1.45
VPS53-213ENST00000572334 CXCL13O43927 109 aa6□□□□□ -1.45
VPS53-213ENST00000572334 GLRA3O75311 464 aa6□□□□□ -1.45
VPS53-213ENST00000572334 GCM2O75603 506 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 SOX30O94993 753 aa6□□□□□ -1.45
VPS53-213ENST00000572334 KCNK2O95069 426 aa6□□□□□ -1.45
VPS53-213ENST00000572334 UROSP10746 265 aa6□□□□□ -1.45
VPS53-213ENST00000572334 MYL2P10916 166 aa6□□□□□ -1.45
VPS53-213ENST00000572334 PRPS2P11908 318 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ZNF17P17021 662 aa6□□□□□ -1.45
VPS53-213ENST00000572334 NTSP30990 170 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ARRB2P32121 409 aa6□□□□□ -1.45
VPS53-213ENST00000572334 CRHR1P34998 444 aa6□□□□□ -1.45
VPS53-213ENST00000572334 EIF1AXP47813 144 aaKnown RBP6□□□□□ -1.45
VPS53-213ENST00000572334 RFX3P48380 749 aa6□□□□□ -1.45
VPS53-213ENST00000572334 PTH2RP49190 550 aa6□□□□□ -1.45
VPS53-213ENST00000572334 EEFSECP57772 596 aaKnown RBP6□□□□□ -1.45
VPS53-213ENST00000572334 MAGOHP61326 146 aaKnown RBP6□□□□□ -1.45
VPS53-213ENST00000572334 RAC1P63000 192 aa6□□□□□ -1.45
VPS53-213ENST00000572334 SLC18A2Q05940 514 aa6□□□□□ -1.45
VPS53-213ENST00000572334 PCLAFQ15004 111 aa6□□□□□ -1.45
VPS53-213ENST00000572334 UGT3A2Q3SY77 523 aa6□□□□□ -1.45
VPS53-213ENST00000572334 RFTN2Q52LD8 501 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 FIGNL1Q6PIW4 674 aa6□□□□□ -1.45
VPS53-213ENST00000572334 C20orf204Q6ZNR8 217 aa6□□□□□ -1.45
VPS53-213ENST00000572334 RNF165Q6ZSG1 346 aa6□□□□□ -1.45
VPS53-213ENST00000572334 CHMP1BQ7LBR1 199 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ZNF554Q86TJ5 538 aa6□□□□□ -1.45
VPS53-213ENST00000572334 P3H2Q8IVL5 708 aa6□□□□□ -1.45
VPS53-213ENST00000572334 GATSQ8NAP1 163 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ZBTB8BQ8NAP8 495 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 NUP43Q8NFH3 380 aa6□□□□□ -1.45
VPS53-213ENST00000572334 OR6K3Q8NGY3 331 aa6□□□□□ -1.45
VPS53-213ENST00000572334 FBXO30Q8TB52 745 aa6□□□□□ -1.45
VPS53-213ENST00000572334 LRRC8CQ8TDW0 803 aa6□□□□□ -1.45
VPS53-213ENST00000572334 TLCD1Q96CP7 247 aa6□□□□□ -1.45
VPS53-213ENST00000572334 OTUB1Q96FW1 271 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 GMPPAQ96IJ6 420 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 METTL2AQ96IZ6 378 aaKnown RBP6□□□□□ -1.45
VPS53-213ENST00000572334 RNF145Q96MT1 663 aa6□□□□□ -1.45
VPS53-213ENST00000572334 SLC39A3Q9BRY0 314 aa6□□□□□ -1.45
VPS53-213ENST00000572334 GATA5Q9BWX5 397 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 KLHL4Q9C0H6 718 aa6□□□□□ -1.45
VPS53-213ENST00000572334 REEP4Q9H6H4 257 aa6□□□□□ -1.45
VPS53-213ENST00000572334 PTGES2Q9H7Z7 377 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ZNF395Q9H8N7 513 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 PPCSQ9HAB8 311 aa6□□□□□ -1.45
VPS53-213ENST00000572334 EQTNQ9NQ60 294 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ZNF701Q9NV72 531 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 MED17Q9NVC6 651 aa6□□□□□ -1.45
VPS53-213ENST00000572334 NKIRAS1Q9NYS0 192 aa6□□□□□ -1.45
VPS53-213ENST00000572334 ING1Q9UK53 422 aaPredicted RBP6□□□□□ -1.45
VPS53-213ENST00000572334 SH3GLB1Q9Y371 365 aa6□□□□□ -1.45
VPS53-213ENST00000572334 A0A087WZY1 265 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 A0A1W2PQD3 144 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 TMEM233B4DJY2 109 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 INAFM1C9JVW0 142 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 NPIPB9F8W1W9 429 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 OVOL3O00110 214 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 SMAD7O15105 426 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 LSM1O15116 133 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 PDPK1O15530 556 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ARHGEF9O43307 516 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 AKAP10O43572 662 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 NDUFB5O43674 189 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 SNX3O60493 162 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 SEC22BO75396 215 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 KCNH1O95259 989 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 NTN1O95631 604 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 CHRNGP07510 517 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 THBS1P07996 1170 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 PSMB1P20618 241 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 EFNA1P20827 205 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 FPR1P21462 350 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 EDNRAP25101 427 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 AGTR1P30556 359 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 GSTT1P30711 240 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 KCNJ5P48544 419 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 PRIM2P49643 509 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 PSMD4P55036 377 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 RPS3AP61247 264 aaKnown RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 TUBA4AP68366 448 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 FGFBP1Q14512 234 aa5.99□□□□□ -1.45
VPS53-213ENST00000572334 ZNHIT3Q15649 155 aaPredicted RBP5.99□□□□□ -1.45
VPS53-213ENST00000572334 TOMM34Q15785 309 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms