RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TUBGCP3Q96CW5 907 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 KLHL15Q96M94 604 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 STACQ99469 402 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 ACTRT3Q9BYD9 372 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 SRXN1Q9BYN0 137 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 PIGUQ9H490 435 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 SERHL2Q9H4I8 314 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 DUSP22Q9NRW4 184 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 CARD8Q9Y2G2 431 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 A0A1W2PQD3 144 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 WDR91A4D1P6 747 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 CFLARO15519 480 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 ITM2AO43736 263 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 NTN1O95631 604 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 BPGMP07738 259 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 G6PDP11413 515 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 ME2P23368 584 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 AGTR1P30556 359 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 RAC1P63000 192 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 FGFBP1Q14512 234 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 ZCCHC12Q6PEW1 402 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 MISPQ8IVT2 679 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 CLECL1Q8IZS7 167 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 TMCO5AQ8N6Q1 288 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 ATP6V1C2Q8NEY4 427 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 RFWD2Q8NHY2 731 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 ACTRT2Q8TDY3 377 aa16.95■□□□□ 0.3
VPS35-202ENST00000561713 GMPPAQ96IJ6 420 aaPredicted RBP16.95■□□□□ 0.3
VPS35-202ENST00000561713 FAF1Q9UNN5 650 aaPredicted RBP16.95■□□□□ 0.3
VPS35-202ENST00000561713 CADP27708 2225 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 CENPVL1A0A0U1RR11 272 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.94■□□□□ 0.3
VPS35-202ENST00000561713 ADAMDEC1O15204 470 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 TYROBPO43914 113 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 CRLF1O75462 422 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 RPL3P39023 403 aaKnown RBP16.94■□□□□ 0.3
VPS35-202ENST00000561713 CCR4P51679 360 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 CASP9P55211 416 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 HBA1P69905 142 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 KRTAP1-1Q07627 177 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 CAPRIN1Q14444 709 aaKnown RBP16.94■□□□□ 0.3
VPS35-202ENST00000561713 ZNF239Q16600 458 aaKnown RBP16.94■□□□□ 0.3
VPS35-202ENST00000561713 ALKBH2Q6NS38 261 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 STAC2Q6ZMT1 411 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 ESPNLQ6ZVH7 1005 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 WFDC8Q8IUA0 241 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 LILRA2Q8N149 483 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 FBXO27Q8NI29 283 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 SFXN5Q8TD22 340 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 ADAMTS15Q8TE58 950 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 OR7D2Q96RA2 312 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 STOML1Q9UBI4 398 aa16.94■□□□□ 0.3
VPS35-202ENST00000561713 IGHV3-15A0A0B4J1V0 119 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 KLF4O43474 513 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 EFNA2O43921 213 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 HSPA4LO95757 839 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 PAX1P15863 534 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 DDX5P17844 614 aaKnown RBP16.93■□□□□ 0.3
VPS35-202ENST00000561713 LCN1P31025 176 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 ETV4P43268 484 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 NR1H2P55055 460 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 OCRLQ01968 901 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 ZNF844Q08AG5 666 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 TSC22D1Q15714 1073 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 PGS1Q32NB8 556 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 OR4F3Q6IEY1 312 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 RIMKLAQ8IXN7 391 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 ZNF781Q8N8C0 355 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 PSMA8Q8TAA3 256 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 TMEM171Q8WVE6 324 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 OSTF1Q92882 214 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 DUSP26Q9BV47 211 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 COQ10BQ9H8M1 238 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 ZNF701Q9NV72 531 aaPredicted RBP16.93■□□□□ 0.3
VPS35-202ENST00000561713 ATAD3AQ9NVI7 634 aa16.93■□□□□ 0.3
VPS35-202ENST00000561713 SONP18583 2426 aaKnown RBP16.93■□□□□ 0.3
VPS35-202ENST00000561713 PLAUP00749 431 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 SERPINB5P36952 375 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 TNK1Q13470 666 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 KRT71Q3SY84 523 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 KLHL26Q53HC5 615 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 PDZK1Q5T2W1 519 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 ZNF704Q6ZNC4 412 aaPredicted RBP16.92■□□□□ 0.3
VPS35-202ENST00000561713 ANKRD46Q86W74 232 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 ZNF527Q8NB42 609 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 RNF128Q8TEB7 428 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 NANOS1Q8WY41 292 aaKnown RBP16.92■□□□□ 0.3
VPS35-202ENST00000561713 CAVIN3Q969G5 261 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 COQ8BQ96D53 544 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 SLC35G5Q96KT7 338 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 BHLHE41Q9C0J9 482 aaPredicted RBP16.92■□□□□ 0.3
VPS35-202ENST00000561713 ACTR6Q9GZN1 396 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 ICAM5Q9UMF0 924 aa16.92■□□□□ 0.3
VPS35-202ENST00000561713 RNF103-CHMP3A0A140T963 221 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 NPIPB9F8W1W9 429 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 TUBBP07437 444 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 PRKCAP17252 672 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 PRPS1L1P21108 318 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 ELK4P28324 431 aa16.91■□□□□ 0.3
VPS35-202ENST00000561713 P2RX1P51575 399 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms