RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 FAM74A7A6NL05 159 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 NBR2O15453 112 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 GCFC2P16383 781 aaKnown RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 XRCC1P18887 633 aaPredicted RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 MAGP20916 626 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 COX7A1P24310 79 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 LONP1P36776 959 aaKnown RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 PMELP40967 661 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 EXOSC2Q13868 293 aaKnown RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 LASP1Q14847 261 aaKnown RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 CCDC40Q4G0X9 1142 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 FAM74A3Q4VXF1 159 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 UNQ9370/PRO34162Q6UXP9 181 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 MIER3Q7Z3K6 550 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 ANKRD20A12PQ8NF67 263 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 CNIH3Q8TBE1 160 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 SLC5A11Q8WWX8 675 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 OR5B2Q96R09 309 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 FEM1AQ9BSK4 669 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 SRXN1Q9BYN0 137 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 CRNKL1Q9BZJ0 848 aaKnown RBP2.18□□□□□ -2.06
SCFD1-216ENST00000555550 IL20RAQ9UHF4 553 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 USP16Q9Y5T5 823 aa2.18□□□□□ -2.06
SCFD1-216ENST00000555550 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 LRCOL1A6NCL2 159 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 ZNF705EA8MWA4 302 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 SLC25A27O95847 323 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 PCCAP05165 728 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 UQCRBP14927 111 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 ZNF823P16415 610 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 LHX2P50458 406 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 CCR6P51684 374 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 MTTPP55157 894 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 NTHL1P78549 312 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 LANCL3Q6ZV70 420 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 ARMCX2Q7L311 632 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 EFCAB13Q8IY85 973 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 OR51G1Q8NGK1 321 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 FCGR1BQ92637 280 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 NCLNQ969V3 563 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 NSMCE2Q96MF7 247 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 FOPNLQ96NB1 174 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 CYP2S1Q96SQ9 504 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 RNF126Q9BV68 326 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 PLGRKTQ9HBL7 147 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 SYTL2Q9HCH5 934 aa2.17□□□□□ -2.06
SCFD1-216ENST00000555550 ZNF282Q9UDV7 671 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 MTRF1LQ9UGC7 380 aaKnown RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 MTCL1Q9Y4B5 1905 aaKnown RBP2.17□□□□□ -2.06
SCFD1-216ENST00000555550 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 HELTA6NFD8 242 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 CFAP73A6NFT4 308 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 LRRC30A6NM36 301 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 WASH3PC4AMC7 463 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 DLGAP1O14490 977 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 RIPK2O43353 540 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 HCN1O60741 890 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 KERAO60938 352 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 UFL1O94874 794 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 HBQ1P09105 142 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 HNRNPA2B1P22626 353 aaKnown RBP2.16□□□□□ -2.06
SCFD1-216ENST00000555550 AHCYP23526 432 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 ADSSP30520 456 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 SH3BGRP55822 239 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-216ENST00000555550 CBX3Q13185 183 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 TMEM52BQ4KMG9 183 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 LIPNQ5VXI9 398 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 OR6B2Q6IFH4 312 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 WASH2PQ6VEQ5 465 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 TMEM184AQ6ZMB5 413 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 OR52E1Q8NGJ3 308 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 ATP6V0A1Q93050 837 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 RAB7BQ96AH8 199 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 RPUSD4Q96CM3 377 aaKnown RBP2.16□□□□□ -2.06
SCFD1-216ENST00000555550 FAM210BQ96KR6 192 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 MCHR1Q99705 422 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 RASL11BQ9BPW5 248 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 ATG10Q9H0Y0 220 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 LPAR2Q9HBW0 351 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 AIG1Q9NVV5 245 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 STOX2Q9P2F5 926 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-216ENST00000555550 NUFIP1Q9UHK0 495 aaKnown RBP2.16□□□□□ -2.06
SCFD1-216ENST00000555550 CYTH4Q9UIA0 394 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 APPL1Q9UKG1 709 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 ERVW-1Q9UQF0 538 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 UGT2A1Q9Y4X1 527 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 PTCH1Q13635 1447 aa2.16□□□□□ -2.06
SCFD1-216ENST00000555550 CCDC7Q96M83 1385 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 SERPINE3A8MV23 424 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 PES1O00541 588 aaKnown RBP2.15□□□□□ -2.07
SCFD1-216ENST00000555550 ZNF780AO75290 641 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-216ENST00000555550 PCCBP05166 539 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 ADRB3P13945 408 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 SFNP31947 248 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 SLC26A5P58743 744 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 ACTA1P68133 377 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 NDUFA9Q16795 377 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 NEK5Q6P3R8 708 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 SAXO1Q8IYX7 474 aa2.15□□□□□ -2.07
SCFD1-216ENST00000555550 M1APQ8TC57 530 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms