RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FAM47E-STBD1D6RA91 191 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 FXYD1O00168 92 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 LINGO3P0C6S8 592 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 PGM1P36871 562 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 SUMO3P55854 103 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-226ENST00000553011 CLDN18P56856 261 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 NUP107P57740 925 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 KCNJ10P78508 379 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 ADRM1Q16186 407 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 COQ5Q5HYK3 327 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 C1orf185Q5T7R7 199 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 AAGABQ6PD74 315 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 ENPP6Q6UWR7 440 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 VRK2Q86Y07 508 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 EID3Q8N140 333 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 FAM71CQ8NEG0 241 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 OR5W2Q8NH69 310 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 NFKBIDQ8NI38 313 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 POC1BQ8TC44 478 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 PHF10Q8WUB8 498 aaKnown RBP12.76□□□□□ -0.37
PTCH1-226ENST00000553011 WDR60Q8WVS4 1066 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 OIT3Q8WWZ8 545 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 CNOT9Q92600 299 aaKnown RBP12.76□□□□□ -0.37
PTCH1-226ENST00000553011 RCN3Q96D15 328 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 PIGQQ9BRB3 760 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 THUMPD3Q9BV44 507 aaKnown RBP12.76□□□□□ -0.37
PTCH1-226ENST00000553011 MYLK2Q9H1R3 596 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 SLC35A3Q9Y2D2 325 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 ASH1LQ9NR48 2969 aaKnown RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 A0A0G2JPF8 293 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 AHRRA9YTQ3 701 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 HNRNPCL2B2RXH8 293 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 HNRNPCL3B7ZW38 293 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 C5orf58C9J3I9 102 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 H3BML4 177 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 HNRNPCL1O60812 293 aaKnown RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 DBIP07108 87 aaKnown RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 HNRNPCL4P0DMR1 293 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 GLI4P10075 376 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 COX4I1P13073 169 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 GABRA1P14867 456 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 CPN1P15169 458 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 IL7RP16871 459 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 ZNF708P17019 499 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 POU3F2P20265 443 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PSMA4P25789 261 aaKnown RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 CDK6Q00534 326 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PMPCAQ10713 525 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 FOXF1Q12946 379 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 GNA13Q14344 377 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 ACSF3Q4G176 576 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 RABL3Q5HYI8 236 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 TMEM211Q6ICI0 200 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 NANOGP8Q6NSW7 305 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 MTFR2Q6P444 385 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 RPTNQ6XPR3 784 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 B3GNT6Q6ZMB0 384 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PIGWQ7Z7B1 504 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PEX5LQ8IYB4 626 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PM20D2Q8IYS1 436 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 UBQLNLQ8IYU4 475 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 GTPBP8Q8N3Z3 284 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 TOR1AIP2Q8NFQ8 470 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 OR52P1PQ8NH57 321 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 ITLN2Q8WWU7 325 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-226ENST00000553011 SMPDL3BQ92485 455 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PMM1Q92871 262 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 ZBTB8AQ96BR9 441 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 LRRC58Q96CX6 371 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 RNF145Q96MT1 663 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 TUBA1CQ9BQE3 449 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 TTYH2Q9BSA4 534 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 NANOGQ9H9S0 305 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 BCL2L10Q9HD36 194 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 PKDREJQ9NTG1 2253 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 CENPEQ02224 2701 aa12.75□□□□□ -0.37
PTCH1-226ENST00000553011 A1L4Q6 167 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 C7orf72A4D263 438 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 H0Y3Z8 333 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 H0YC42 278 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 SEC14L5O43304 696 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 DNAJA2O60884 412 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 ADAM11O75078 769 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 PGM3O95394 542 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 OPN1LWP04000 364 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 PEPDP12955 493 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 NID1P14543 1247 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 ZNF17P17021 662 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 PRKCAP17252 672 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 IL11P20809 199 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 RYKP34925 604 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 TPD52P55327 224 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-226ENST00000553011 CLDN15P56746 228 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 CLDN20P56880 219 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 CBFBQ13951 182 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 SCARB2Q14108 478 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 QPRTQ15274 297 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 CYP51A1Q16850 503 aa12.74□□□□□ -0.37
PTCH1-226ENST00000553011 MRPL2Q5T653 305 aaKnown RBP12.74□□□□□ -0.37
PTCH1-226ENST00000553011 PRAMEF8Q5VWM4 474 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms