RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 H0YC42 278 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 M0R233 179 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 CLIC1O00299 241 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SLC16A5O15375 505 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 GMDSO60547 372 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ULK1O75385 1050 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ANXA5P08758 320 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 BCKDHAP12694 445 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ACADLP28330 430 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PIK3CGP48736 1102 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 AGFG1P52594 562 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ATP12AP54707 1039 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 EPHA4P54764 986 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 CLDN8P56748 225 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 KCNJ10P78508 379 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 GRM7Q14831 915 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PTGES3Q15185 160 aaKnown RBP7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MEDAGQ5VYS4 303 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF730Q6ZMV8 503 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 FAM92BQ6ZTR7 304 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PDZD3Q86UT5 571 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 ADGRF3Q8IZF5 1079 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LMNTD1Q8N9Z9 388 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 OR4E2Q8NGC2 313 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 OR5AR1Q8NGP9 310 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM163Q8TC26 289 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 FANK1Q8TC84 345 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 HGDQ93099 445 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 RADILQ96JH8 1075 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TGM7Q96PF1 710 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 CMKLR1Q99788 373 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 DPYSL5Q9BPU6 564 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 MAPKAP1Q9BPZ7 522 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SOSTQ9BQB4 213 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 STRADBQ9C0K7 418 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 KIR3DX1Q9H7L2 352 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM184CQ9NVA4 438 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 WWOXQ9NZC7 414 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 LIPT1Q9Y234 373 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 PIEZO2Q9H5I5 2752 aa7.13□□□□□ -1.27
LIMA1-216ENST00000552909 SEC16AO15027 2179 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C7orf66A4D0T2 115 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SMIM30A4D0T7 59 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR6C74A6NCV1 312 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CDRT15L2A8MXV6 281 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 AKAP8O43823 692 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HPGDSO60760 199 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 DXOO77932 396 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 B3GALT4O96024 378 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CFDP00746 253 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HBQ1P09105 142 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 MAPK1P28482 360 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SLC6A1P30531 599 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CAPZBP47756 277 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 HOXA1P49639 335 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 POLR2GP62487 172 aaKnown RBP eCLIP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SPIBQ01892 262 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 VEZF1Q14119 521 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ELOAQ14241 798 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 KRT33BQ14525 404 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 GPR68Q15743 365 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 MICAQ29983 383 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 EXOC3L2Q2M3D2 409 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CCSMST1Q4G0I0 132 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SGO1Q5FBB7 561 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 CD276Q5ZPR3 534 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 RASSF6Q6ZTQ3 369 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PTOV1Q86YD1 416 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FAM9CQ8IZT9 166 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 NANOGP1Q8N7R0 232 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 AVL9Q8NBF6 648 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PROKR2Q8NFJ6 384 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR8K3Q8NH51 312 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OR52J3Q8NH60 311 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SPPL2AQ8TCT8 520 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 FGF11Q92914 225 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 OTUB1Q96FW1 271 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 WBP1Q96G27 269 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 DCBLD2Q96PD2 775 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SECISBP2Q96T21 854 aaKnown RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C12orf57Q99622 126 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 KATNB1Q9BVA0 655 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 PRR14Q9BWN1 585 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 C1QTNF6Q9BXI9 259 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 RBCK1Q9BYM8 510 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 REG4Q9BYZ8 158 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 MS4A7Q9GZW8 240 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-216ENST00000552909 RERGLQ9H628 205 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 XKR8Q9H6D3 395 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SLCO1C1Q9NYB5 712 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 GPRC5BQ9NZH0 403 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 KCMF1Q9P0J7 381 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ASF1AQ9Y294 204 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 ASB4Q9Y574 426 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SDK2Q58EX2 2172 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 IGHV5-51A0A0C4DH38 117 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 A0A1B0GVI7 797 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 SLC22A23A1A5C7 686 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM8BA6NDV4 472 aa7.12□□□□□ -1.27
LIMA1-216ENST00000552909 A8MVJ9 347 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms