RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 A0A0G2JPF8 293 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 CLDN24A6NM45 220 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 EVPLLA8MZ36 301 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 HNRNPCL2B2RXH8 293 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 HNRNPCL3B7ZW38 293 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 HNRNPCL1O60812 293 aaKnown RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 SHOX2O60902 331 aaPredicted RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 CSTAP01040 98 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 DBIP07108 87 aaKnown RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 HNRNPCL4P0DMR1 293 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 NID1P14543 1247 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 AGAP20933 346 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 GCKP35557 465 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 CLDN15P56746 228 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 ACSF3Q4G176 576 aaPredicted RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 SLC25A53Q5H9E4 307 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 C1orf185Q5T7R7 199 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 RAET1LQ5VY80 246 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 ZNF585AQ6P3V2 769 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 ENPP6Q6UWR7 440 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 RPTNQ6XPR3 784 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 SEM1Q6ZVN7 128 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 NET1Q7Z628 596 aaPredicted RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 TREML1Q86YW5 311 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 OR5W2Q8NH69 310 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 RP9Q8TA86 221 aaKnown RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 ZPLD1Q8TCW7 415 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 LRRC58Q96CX6 371 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 DOCK7Q96N67 2140 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 UCN2Q96RP3 112 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 TTYH2Q9BSA4 534 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 RSPO3Q9BXY4 272 aaPredicted RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 TRIM8Q9BZR9 551 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 FAM107BQ9H098 131 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.28■□□□□ 0.36
DDX55-211ENST00000544429 VDAC3Q9Y277 283 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 ZNF337Q9Y3M9 751 aa17.28■□□□□ 0.36
DDX55-211ENST00000544429 LOC100653049A0A140TA62 436 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 GTPBP1O00178 669 aaKnown RBP17.27■□□□□ 0.36
DDX55-211ENST00000544429 GMFGO60234 142 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 ADAM11O75078 769 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 KRT34O76011 436 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 PGM3O95394 542 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 EPPINO95925 133 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 THBS1P07996 1170 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 GLI4P10075 376 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 ESRRAP11474 423 aaPredicted RBP17.27■□□□□ 0.36
DDX55-211ENST00000544429 ADH6P28332 368 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 STARP49675 285 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 GZMMP51124 257 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 MTPNP58546 118 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 CYLC2Q14093 348 aaPredicted RBP17.27■□□□□ 0.36
DDX55-211ENST00000544429 TOMM34Q15785 309 aaPredicted RBP17.27■□□□□ 0.36
DDX55-211ENST00000544429 GCNT6Q5T4J0 391 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 NANOGP8Q6NSW7 305 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 B3GNT6Q6ZMB0 384 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 HMGN2P46Q86SG4 172 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 PTOV1Q86YD1 416 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 OR5M1Q8NGP8 315 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 NANOGQ9H9S0 305 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 CHST2Q9Y4C5 530 aa17.27■□□□□ 0.36
DDX55-211ENST00000544429 ASH1LQ9NR48 2969 aaKnown RBP17.27■□□□□ 0.35
DDX55-211ENST00000544429 CACNA1CQ13936 2221 aa17.27■□□□□ 0.35
DDX55-211ENST00000544429 MED12LQ86YW9 2145 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 CDHR4A6H8M9 788 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 CD8B2A6NJW9 211 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 KDM4EB2RXH2 506 aaPredicted RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 SHISA8B8ZZ34 492 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 MRASO14807 208 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 PEPDP12955 493 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 ETS2P15036 469 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 PRKCAP17252 672 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 TCEA1P23193 301 aaKnown RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 ZNF41P51814 821 aaPredicted RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 EEF1A1P68104 462 aaKnown RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 CDK6Q00534 326 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 CAPRIN1Q14444 709 aaKnown RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 RPS26P11Q5JNZ5 115 aaPredicted RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 RNF220Q5VTB9 566 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 TMEM211Q6ICI0 200 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 GRAMD2AQ8IUY3 354 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 PEX5LQ8IYB4 626 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 OR8J3Q8NGG0 315 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 WDR60Q8WVS4 1066 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 CNOT9Q92600 299 aaKnown RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 SLC39A3Q9BRY0 314 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 DNAJB12Q9NXW2 375 aaKnown RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 GPC6Q9Y625 555 aaPredicted RBP17.26■□□□□ 0.35
DDX55-211ENST00000544429 AP4B1Q9Y6B7 739 aa17.26■□□□□ 0.35
DDX55-211ENST00000544429 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 TMEM247A6NEH6 219 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 EFNA2O43921 213 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 UBTFL6P0CB48 400 aaPredicted RBP17.25■□□□□ 0.35
DDX55-211ENST00000544429 COX4I1P13073 169 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 EIF1P41567 113 aaKnown RBP17.25■□□□□ 0.35
DDX55-211ENST00000544429 NUP107P57740 925 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 CBFBQ13951 182 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 MRPL2Q5T653 305 aaKnown RBP17.25■□□□□ 0.35
DDX55-211ENST00000544429 NSUN5P2Q63ZY6 315 aa17.25■□□□□ 0.35
DDX55-211ENST00000544429 REEP3Q6NUK4 255 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms