RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TCEAL2Q9H3H9 227 aaPredicted RBP3.23□□□□□ -1.89
CD44-235ENST00000532339 C5orf66Q9H5L9 145 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ZDHHC6Q9H6R6 413 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 PDRG1Q9NUG6 133 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ANO10Q9NW15 660 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 COMMD8Q9NX08 183 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 OR6C2Q9NZP2 312 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ODF2LQ9ULJ1 636 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 CLEC4EQ9ULY5 219 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 KCNK6Q9Y257 313 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 ITM2BQ9Y287 266 aa3.23□□□□□ -1.89
CD44-235ENST00000532339 USF3Q68DE3 2245 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 IGHV4-4A0A075B6R2 117 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 TTC26A0AVF1 554 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SLC9B1P1A6NJY1 282 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 E5RGE8 158 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 E9PQ18 207 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SCO2O43819 266 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SLC19A2O60779 497 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 ZFAND5O76080 213 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 AP2A2O94973 939 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 NGFP01138 241 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 GPIP06744 558 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 KRT3P12035 628 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 GAP43P17677 238 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 CD1CP29017 333 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 PTPN4P29074 926 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SRD5A2P31213 254 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 NDST2P52849 883 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 CASP9P55211 416 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 RPP38P78345 283 aaKnown RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 RAPSNQ13702 412 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 ELAVL3Q14576 367 aaKnown RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 ACKR1Q16570 336 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 TPRG1LQ5T0D9 272 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SPINK14Q6IE38 97 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 OR4C11Q6IEV9 310 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 ZNF613Q6PF04 617 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 C1orf186Q6ZWK4 172 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 SH2D6Q7Z4S9 175 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 P2RY8Q86VZ1 359 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 GKN2Q86XP6 184 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 WDR49Q8IV35 697 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 LAX1Q8IWV1 398 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 KIRREL3Q8IZU9 778 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 PRSS35Q8N3Z0 413 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 C3orf56Q8N813 242 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 OR4C3Q8NH37 302 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 PHF10Q8WUB8 498 aaKnown RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 KLK6Q92876 244 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 FAM46BQ96A09 425 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 AZIN2Q96A70 460 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 BTBD9Q96Q07 612 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 DDX50Q9BQ39 737 aaKnown RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 TSPYL1Q9H0U9 437 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 C10orf88Q9H8K7 445 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 RNF121Q9H920 327 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 FN3KRPQ9HA64 309 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 MAGEF1Q9HAY2 307 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 APMAPQ9HDC9 416 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 PLCXD1Q9NUJ7 323 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 TRMT6Q9UJA5 497 aaKnown RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 FOXA2Q9Y261 457 aaPredicted RBP3.22□□□□□ -1.89
CD44-235ENST00000532339 ZNF510Q9Y2H8 683 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 MEMO1Q9Y316 297 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 NSG2Q9Y328 171 aa3.22□□□□□ -1.89
CD44-235ENST00000532339 MDC1Q14676 2089 aaKnown RBP3.21□□□□□ -1.89
CD44-235ENST00000532339 SEC16AO15027 2179 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 TMEM129A0AVI4 362 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 MAGEB16A2A368 324 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 KPNA7A9QM74 516 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 SNURFLB1AK76 121 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 F8VP50 259 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 K7ERI5 159 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 GLRA3O75311 464 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CDK2AP2O75956 126 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 KRT33AO76009 404 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 LETM1O95202 739 aaPredicted RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 LYPLA2O95372 231 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 YES1P07947 543 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CLTAP09496 248 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 ZDHHC11BP0C7U3 371 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CXCL8P10145 99 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 POLR2EP19388 210 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 ATP5C1P36542 298 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 OR3A3P47888 321 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 SLC6A12P48065 614 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 DNA2P51530 1060 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 OR1D5P58170 312 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 PFN3P60673 137 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 HERV-K104P61576 105 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 RPS15P62841 145 aaKnown RBP3.21□□□□□ -1.9
CD44-235ENST00000532339 SLC34A1Q06495 639 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 TFF3Q07654 80 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 GTF3C1Q12789 2109 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CETN1Q12798 172 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 CNTN1Q12860 1018 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 PDE7AQ13946 482 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 MAPK11Q15759 364 aa3.21□□□□□ -1.9
CD44-235ENST00000532339 C3AR1Q16581 482 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms