RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SLC10A1Q14973 349 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 SPATS1Q496A3 300 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 GLIPR1L2Q4G1C9 344 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 CYBRD1Q53TN4 286 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 GLYATQ6IB77 296 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 DHRS4L2Q6PKH6 230 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 YRDCQ86U90 279 aaKnown RBP13.61□□□□□ -0.23
NUP54-213ENST00000513352 ZNF440Q8IYI8 595 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 FAM83FQ8NEG4 500 aaPredicted RBP13.61□□□□□ -0.23
NUP54-213ENST00000513352 BHLHE22Q8NFJ8 381 aaPredicted RBP13.61□□□□□ -0.23
NUP54-213ENST00000513352 OR5W2Q8NH69 310 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 ZNF563Q8TA94 476 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 FAR1Q8WVX9 515 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 RASSF5Q8WWW0 418 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 NR4A3Q92570 626 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 PROX1Q92786 737 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 C1GALT1C1Q96EU7 318 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 PCDHAC1Q9H158 963 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 SLC6A15Q9H2J7 730 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 ADPRHL2Q9NX46 363 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 TAS2R10Q9NYW0 307 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 RPH3AQ9Y2J0 694 aaPredicted RBP13.61□□□□□ -0.23
NUP54-213ENST00000513352 SNX13Q9Y5W8 968 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 FAM208BQ5VWN6 2430 aa13.61□□□□□ -0.23
NUP54-213ENST00000513352 IGLV3-32A0A0A0MS00 114 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 CDHR4A6H8M9 788 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 B4DXG7 233 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 ARPC2O15144 300 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 FRS3O43559 492 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 SERPINA1P01009 418 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 LINGO3P0C6S8 592 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 PGCP20142 388 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 MST1P26927 711 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 SRD5A2P31213 254 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 SLC6A8P48029 635 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 GANABQ14697 944 aaKnown RBP13.6□□□□□ -0.23
NUP54-213ENST00000513352 ZSWIM7Q19AV6 140 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 HYAL4Q2M3T9 481 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 WIPI1Q5MNZ9 446 aaPredicted RBP13.6□□□□□ -0.23
NUP54-213ENST00000513352 RAET1LQ5VY80 246 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 ARSKQ6UWY0 536 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 FAM71CQ8NEG0 241 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 VANGL1Q8TAA9 524 aaPredicted RBP13.6□□□□□ -0.23
NUP54-213ENST00000513352 KLHDC3Q9BQ90 382 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 EXOSC3Q9NQT5 275 aaKnown RBP13.6□□□□□ -0.23
NUP54-213ENST00000513352 MED17Q9NVC6 651 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 QPCTLQ9NXS2 382 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 LIPGQ9Y5X9 500 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 V9GYQ6 96 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 DNAJC13O75165 2243 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 ZNF407Q9C0G0 2248 aa13.6□□□□□ -0.23
NUP54-213ENST00000513352 TRGV5A0A0B4J1U4 118 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 CFAP73A6NFT4 308 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 SHISA8B8ZZ34 492 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 M0R3H8 397 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 AP3D1O14617 1153 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 SUV39H1O43463 412 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 UQCRBP14927 111 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 CD247P20963 164 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 GCKP35557 465 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 KCNJ5P48544 419 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 RGS8P57771 180 aaPredicted RBP13.59□□□□□ -0.23
NUP54-213ENST00000513352 HOXC5Q00444 222 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 PLAURQ03405 335 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 QPRTQ15274 297 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 DUSP7Q16829 419 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 CMPK2Q5EBM0 449 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 FKBP9P1Q75LS8 142 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 ZNF550Q7Z398 422 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 SPPL2CQ8IUH8 684 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 SIAH3Q8IW03 269 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 ZNF843Q8N446 348 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 GPR32P1Q8NGA4 272 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 OR10Q1Q8NGQ4 319 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 LZICQ8WZA0 190 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 NSMCE2Q96MF7 247 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 SFXN2Q96NB2 322 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 CADM1Q9BY67 442 aaKnown RBP13.59□□□□□ -0.23
NUP54-213ENST00000513352 LRMDAQ9H2I8 198 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 UBQLN3Q9H347 655 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 ZDHHC11Q9H8X9 412 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 RPS6KA6Q9UK32 745 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 BAG5Q9UL15 447 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 ICAM5Q9UMF0 924 aa13.59□□□□□ -0.23
NUP54-213ENST00000513352 A0A087WZY1 265 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 B8ZZF3 427 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GSC2O15499 205 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 HPNP05981 417 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 FESP07332 822 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 GP1BBP13224 206 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 PRG2P13727 222 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 TNFRSF1BP20333 461 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 IDH2P48735 452 aaKnown RBP13.58□□□□□ -0.24
NUP54-213ENST00000513352 CRYBA2P53672 197 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 HSF1Q00613 529 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 EPS8Q12929 822 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 FOXF1Q12946 379 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 TOMM34Q15785 309 aaPredicted RBP13.58□□□□□ -0.24
NUP54-213ENST00000513352 POMZP3Q6PJE2 187 aa13.58□□□□□ -0.24
NUP54-213ENST00000513352 CYP2R1Q6VVX0 501 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms