RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 AHCYL2Q96HN2 611 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 PELOQ9BRX2 385 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 ZNF426Q9BUY5 554 aa19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 TRIM2Q9C040 744 aa19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 LANCL2Q9NS86 450 aa19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 CUTCQ9NTM9 273 aa19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 SIGLEC7Q9Y286 467 aa19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 EXOGQ9Y2C4 368 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 SPIN1Q9Y657 262 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-208ENST00000492980 SOX1O00570 391 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 SOCS6O14544 535 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 CBFA2T3O75081 653 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 CD40LGP29965 261 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 ATP12AP54707 1039 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 BNC1Q01954 994 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 RPL13AP3Q6NVV1 102 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 TUBA3EQ6PEY2 450 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 BMP8AQ7Z5Y6 402 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 LSMEM1Q8N8F7 131 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 GATAD2BQ8WXI9 593 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 SLC35B4Q969S0 331 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 ISYNA1Q9NPH2 558 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 USP34Q70CQ2 3546 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 TAF4O00268 1085 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 OR2B3O76000 313 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 RCBTB2O95199 551 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 ATXN8OSP0DMR3 200 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 BMP7P18075 431 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 CD79BP40259 229 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 SLC1A3P43003 542 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 SEPHS1P49903 392 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 PSMD7P51665 324 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 PSMD4P55036 377 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 CFHR1Q03591 330 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 ZSWIM7Q19AV6 140 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 THSD4Q6ZMP0 1018 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 LNX2Q8N448 690 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 ZNF485Q8NCK3 441 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 MROQ9BYG7 248 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 SSR3Q9UNL2 185 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 OR10H1Q9Y4A9 318 aa19.46■□□□□ 0.71
CCDC88B-208ENST00000492980 FAM183AA6NL82 134 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 TMEM150CB9EJG8 249 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF670-ZNF695F2Z2N8 137 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 K7ESF4 209 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 BCAT2O15382 392 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 TSPAN19P0C672 248 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 SAGP10523 405 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 RBM34P42696 430 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 AFF3P51826 1226 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 OXA1LQ15070 435 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 TTLL10Q6ZVT0 673 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF550Q7Z398 422 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 FN3KQ9H479 309 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 DAPK2Q9UIK4 370 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 PEX16Q9Y5Y5 336 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 TTC36A6NLP5 189 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 C17orf105B2RV13 164 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 STK25O00506 426 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 NUDT21O43809 227 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 IGHA1P01876 353 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 NGFRP08138 427 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 S100A5P33763 92 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 RPS19P39019 145 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 HSD11B2P80365 405 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 TPBGQ13641 420 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ALG10BQ5I7T1 473 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 PLBD1Q6P4A8 553 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 SMARCD3Q6STE5 483 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 LHFPL3Q86UP9 236 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 LAPTM4BQ86VI4 370 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 GID4Q8IVV7 300 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 SLC25A45Q8N413 288 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ZSCAN1Q8NBB4 408 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ARHGAP9Q9BRR9 750 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ZNF649Q9BS31 505 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 ENAMQ9NRM1 1142 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 RHBDL2Q9NX52 303 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 H2AFY2Q9P0M6 372 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 PRODH2Q9UF12 536 aa19.45■□□□□ 0.7
CCDC88B-208ENST00000492980 PTP4A3O75365 173 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 OR1D4P47884 311 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 BIKQ13323 160 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 DSG2Q14126 1118 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 SLC35F1Q5T1Q4 408 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 NIPAL3Q6P499 406 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 CMIPQ8IY22 773 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 SLC35F3Q8IY50 421 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 CARFQ8N187 725 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 OR4C3Q8NH37 302 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 QPCTLQ9NXS2 382 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 GMEB2Q9UKD1 530 aa19.44■□□□□ 0.7
CCDC88B-208ENST00000492980 TRAV27A0A087WT01 109 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 DMWDQ09019 674 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 TRIM16LQ309B1 348 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 NDUFAF6Q330K2 333 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 KIRREL2Q6UWL6 708 aa19.43■□□□□ 0.7
CCDC88B-208ENST00000492980 LINC00114Q6XXX2 140 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms