RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DCUN1D4Q92564 292 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 SNAPC3Q92966 411 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 ARL11Q969Q4 196 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 SAV1Q9H4B6 383 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-210ENST00000487017 ABRACLQ9P1F3 81 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 A6NIZ1 184 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF736B4DX44 427 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-210ENST00000487017 RDH16O75452 317 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 MT-ND4P03905 459 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 DCNP07585 359 aaKnown RBP15.43■□□□□ 0.06
COL7A1-210ENST00000487017 DUSP3P51452 185 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-210ENST00000487017 RAP1BP61224 184 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 RAP1AP62834 184 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 ERVK-25P63136 954 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 TUBB3Q13509 450 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 GPR137CQ8N3F9 429 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 DIO2Q92813 273 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 ZFP57Q9NU63 452 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 SLC35A3Q9Y2D2 325 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 SLC6A5Q9Y345 797 aa15.43■□□□□ 0.06
COL7A1-210ENST00000487017 SGK494L7N484 410 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 EVI2BP34910 448 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 EIF2DP41214 584 aaKnown RBP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 RPS5P46782 204 aaKnown RBP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 MGAT3Q09327 533 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 USP53Q70EK8 1073 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 TPRA1Q86W33 373 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 INTS14Q96SY0 518 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 CCDC163A0A0D9SF12 145 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 FAM183AA6NL82 134 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 F8W036 122 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 SEC14L5O43304 696 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 RAD1O60671 282 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 PROS1P07225 676 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 BLOC1S1P78537 153 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 TDGQ13569 410 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 BADQ92934 168 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 GON7Q9BXV9 100 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 MFFQ9GZY8 342 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 C17orf105B2RV13 164 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 LDB3O75112 727 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 GYPBP06028 91 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 TMEM225BP0DP42 221 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 THBS2P35442 1172 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 TSPAN31Q12999 210 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 MLC1Q15049 377 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 KCNJ8Q15842 424 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 OR2G6Q5TZ20 316 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF100Q8IYN0 542 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 NLGN4YQ8NFZ3 816 aaPredicted RBP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 OR51T1Q8NGJ9 327 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 C8orf33Q9H7E9 229 aaPredicted RBP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 B4GALT7Q9UBV7 327 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 OR8U9P0C7N5 309 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF43P17038 809 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 P2RY2P41231 377 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 CASP3P42574 277 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 HNRNPKP61978 463 aaKnown RBP eCLIP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 OR1Q1Q15612 314 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 OR52R1Q8NGF1 315 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 HRASLS5Q96KN8 279 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 CLSTN3Q9BQT9 956 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 EGLN3Q9H6Z9 239 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 KLK4Q9Y5K2 254 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 PSMB5P28074 263 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 GABRA5P31644 462 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 GJA5P36382 358 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 DAP3P51398 398 aaKnown RBP15.42■□□□□ 0.06
COL7A1-210ENST00000487017 GPR50Q13585 617 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 EEF1A1P5Q5VTE0 462 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 FUNDC1Q8IVP5 155 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 CNTNAP3BQ96NU0 1288 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 ADAM29Q9UKF5 820 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 RARRES3Q9UL19 164 aa15.42■□□□□ 0.06
COL7A1-210ENST00000487017 SRPX2O60687 465 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 IFNGR1P15260 489 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 HOXC13P31276 330 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 ALDH3B2P48448 385 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 KRBOX4Q5JUW0 171 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 METAP1DQ6UB28 335 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 WDR83Q9BRX9 315 aaKnown RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 NOX3Q9HBY0 568 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 DDX60Q8IY21 1712 aaKnown RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 A6NIN4 97 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 CRTAPO75718 401 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 GLO1Q04760 184 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 P2RY14Q15391 338 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 LRRC56Q8IYG6 542 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 L3MBTL4Q8NA19 623 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SLC46A2Q9BY10 475 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 UNKLQ9H9P5 680 aaKnown RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 OR6C2Q9NZP2 312 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 HSFX1Q9UBD0 423 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 RAB3AP20336 220 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 IL22RA1Q8N6P7 574 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 OR2M2Q96R28 347 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 FAM86C1Q9NVL1 165 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 COQ3Q9NZJ6 369 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF337Q9Y3M9 751 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 PIAS3Q9Y6X2 628 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms