RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 GALNT9Q9HCQ5 603 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CTPS2Q9NRF8 586 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 SLC13A4Q9UKG4 626 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 POLHQ9Y253 713 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CARD8Q9Y2G2 431 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 U3KQV3 271 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 FRYQ5TBA9 3013 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CPAMD8Q8IZJ3 1885 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 A0A0B4J2E0 115 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TRBV4-1A0A0J9YWV2 114 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 A0A1B0GWA3 101 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 A0A1B0GX12 115 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ANKRD33BA6NCL7 494 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 H3BNH8 94 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TNFRSF11BO00300 401 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ETV2O00321 342 aaPredicted RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 CDK2AP1O14519 115 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 NEURL1O76050 574 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 GADD45GO95257 159 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 RASAL1O95294 804 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 WISP1O95388 367 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 NTN1O95631 604 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 H1F0P07305 194 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 THRBP10828 461 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 HPGDP15428 266 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ZNF23P17027 643 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ENDOUP21128 410 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 ELAVL4P26378 380 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 VHLP40337 213 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 RRADP55042 308 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 CDH12P55289 794 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 DLX5P56178 289 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 LSM11P83369 360 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP4-210ENST00000483212 SNTA1Q13424 505 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TUBA3CQ13748 450 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 LAPTM4AQ15012 233 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 SEC23BQ15437 767 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 OR1Q1Q15612 314 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 LRRC36Q1X8D7 754 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 EXOC3L2Q2M3D2 409 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 COLEC12Q5KU26 742 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 PPP4R4Q6NUP7 873 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 FAHD1Q6P587 224 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TUBA3EQ6PEY2 450 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ZNF613Q6PF04 617 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 LINC00114Q6XXX2 140 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 WDR88Q6ZMY6 472 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 RTL4Q6ZR62 310 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 PLEKHM3Q6ZWE6 761 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 MDGA2Q7Z553 956 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 PACS2Q86VP3 889 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 RANBP3LQ86VV4 465 aaPredicted RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 CYP4Z1Q86W10 505 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 HIPK1Q86Z02 1210 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 NKAIN4Q8IVV8 208 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 APLFQ8IW19 511 aaPredicted RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 SPACA3Q8IXA5 215 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 SVOPLQ8N434 492 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 CBR4Q8N4T8 237 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TMEM156Q8N614 296 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 FADS6Q8N9I5 356 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TOR1AIP2Q8NFQ8 470 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 SLC7A13Q8TCU3 470 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ADAMTS16Q8TE57 1224 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 EME1Q96AY2 570 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 C3orf49Q96BT1 292 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 SLC41A3Q96GZ6 507 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 SGCZQ96LD1 299 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ZNF559Q9BR84 538 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ZNF426Q9BUY5 554 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 OSBPL11Q9BXB4 747 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 ANKRD19PQ9H560 264 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 CCDC86Q9H6F5 360 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 ZNF552Q9H707 407 aaPredicted RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 HPF1Q9NWY4 346 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 USE1Q9NZ43 259 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 TMEFF2Q9UIK5 374 aaPredicted RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 SAMHD1Q9Y3Z3 626 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 FAM32AQ9Y421 112 aaKnown RBP7.52□□□□□ -1.21
USP4-210ENST00000483212 WIF1Q9Y5W5 379 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 KCNMB2Q9Y691 235 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 CFAP47Q6ZTR5 3102 aa7.52□□□□□ -1.21
USP4-210ENST00000483212 A0A087WUU8 490 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 A0A0G2JMM0 328 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 A0A1W2PPB8 328 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 A0A1W2PRS3 328 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 SH3PXD2BA1X283 911 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 C7orf72A4D263 438 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 TRAPPC13A5PLN9 417 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 ARRDC5A6NEK1 342 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 ANKUB1A6NFN9 424 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 KIR3DP1A8MWS1 328 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 G3V2T6 193 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 GTPBP1O00178 669 aaKnown RBP7.51□□□□□ -1.21
USP4-210ENST00000483212 GNGT2O14610 69 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 LCE2BO14633 110 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 EI24O14681 340 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 TP53I11O14683 189 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 HCRTR2O43614 444 aa7.51□□□□□ -1.21
USP4-210ENST00000483212 TRIM3O75382 744 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms