RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CELSR1Q9NYQ6 3014 aa6.15□□□□□ -1.43
CCDC88A-213ENST00000476903 ANKHD1Q8IWZ3 2542 aaKnown RBP6.15□□□□□ -1.43
CCDC88A-213ENST00000476903 CSMD1Q96PZ7 3565 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 hCG_2014768A0A024R1R8 64 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 CLCA1A8K7I4 914 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 EEF1E1-BLOC1S5C9J1V9 151 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 EEF1E1O43324 174 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FADS1O60427 444 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ZIC3O60481 467 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 RCBTB2O95199 551 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 UTS2O95399 124 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 BPGMP07738 259 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 BCKDHAP12694 445 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF708P17019 499 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 HK1P19367 917 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 TCEA1P23193 301 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FRKP42685 505 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 RFX3P48380 749 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 STARP49675 285 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 DGKQP52824 942 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 PRKAG1P54619 331 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 EEF1A1P68104 462 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FOXD4Q12950 439 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 STX5Q13190 355 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FHL2Q14192 279 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 BCL2A1Q16548 175 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 SMN1Q16637 294 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 DPY19L1Q2PZI1 675 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ATP6AP1LQ52LC2 224 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 XKR7Q5GH72 579 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 EEF1A1P5Q5VTE0 462 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 RAET1LQ5VY80 246 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ZCCHC12Q6PEW1 402 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 POMZP3Q6PJE2 187 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ZCCHC23Q6ZST2 131 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 CHMP1BQ7LBR1 199 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ADGRE4PQ86SQ3 457 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 KIF18BQ86Y91 864 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 GRAMD2AQ8IUY3 354 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 MREGQ8N565 214 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FADS6Q8N9I5 356 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 OR2M3Q8NG83 312 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 GOT1L1Q8NHS2 421 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 PPP1R14CQ8TAE6 165 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 GPR151Q8TDV0 419 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 HOXB13Q92826 284 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 RMND5BQ96G75 393 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 PIGQQ9BRB3 760 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 TMEM109Q9BVC6 243 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 SFXN3Q9BWM7 321 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 TBL1XR1Q9BZK7 514 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 DSN1Q9H410 356 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ATAD3AQ9NVI7 634 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 FLRT3Q9NZU0 649 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 MED11Q9P086 117 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ATP6V1HQ9UI12 483 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 ITGB1BP2Q9UKP3 347 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 V9GYY5 206 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 POLQO75417 2590 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 MED13LQ71F56 2210 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 CCDC168Q8NDH2 2452 aa6.14□□□□□ -1.43
CCDC88A-213ENST00000476903 AKAP9Q99996 3911 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SPG11Q96JI7 2443 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 GXYLT2A0PJZ3 443 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 TUBAL3A6NHL2 446 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 C17orf51A8MQB3 221 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 B4DXG7 233 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SCAMP2O15127 329 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 RGS16O15492 202 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 CTIFO43310 598 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 EMC8O43402 210 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 HCRTR2O43614 444 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 TYROBPO43914 113 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF500O60304 480 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PEX11AO75192 247 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SKAP2O75563 359 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 LYPLA1O75608 230 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 NKX2-2O95096 273 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 HSPA4LO95757 839 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ANGPTL1O95841 491 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 IGKV1D-16P01601 117 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 NGFRP08138 427 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ALOX5P09917 674 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PEPDP12955 493 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 HPGDP15428 266 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 CREB1P16220 341 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 POU3F2P20265 443 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 LCN1P31025 176 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 MAP3K8P41279 467 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ETV4P43268 484 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PRIM2P49643 509 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 AGFG1P52594 562 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 DIO3P55073 304 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 CLDN18P56856 261 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 EEFSECP57772 596 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 B3GALT5-AS1P59052 145 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SORDQ00796 357 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF844Q08AG5 666 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms