RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RNASET2O00584 256 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 SOX30O94993 753 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 SNUPNO95149 360 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CPSF4O95639 269 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CGAP01215 116 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CD8BP10966 210 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 SHC1P29353 583 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CCKARP32238 428 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 P2RX1P51575 399 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CCR4P51679 360 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CASP9P55211 416 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 CTBP2P56545 445 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 KLHL26Q53HC5 615 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 TNFAIP8L3Q5GJ75 292 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 PDSS1Q5T2R2 415 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 HHATQ5VTY9 493 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 ESPNLQ6ZVH7 1005 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 OLIG3Q7RTU3 272 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF550Q7Z398 422 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 LILRA2Q8N149 483 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 KLHL15Q96M94 604 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 WFIKKN1Q96NZ8 548 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 SDF2Q99470 211 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 SLC39A3Q9BRY0 314 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 MED18Q9BUE0 208 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 KLHL4Q9C0H6 718 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 PNPOQ9NVS9 261 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 PAQR5Q9NXK6 330 aaPredicted RBP14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 ELOVL5Q9NYP7 299 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 PCDHGB4Q9UN71 923 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 DTNAQ9Y4J8 743 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 NAV3Q8IVL0 2385 aa14.08□□□□□ -0.16
CCDC88B-205ENST00000472524 DNHD1Q96M86 4753 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 FLNAP21333 2647 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 ADAMDEC1O15204 470 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 LBPP18428 481 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 HOXC12P31275 282 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 UGT2B10P36537 528 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 EIF1P41567 113 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 SUMO3P55854 103 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 BST1Q10588 318 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 GPR68Q15743 365 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 TOMM34Q15785 309 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 PDZK1Q5T2W1 519 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 Q71RC1 249 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 CROCCP2Q86T23 111 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 KRTAP1-3Q8IUG1 177 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 KIRREL3Q8IZU9 778 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 ATP6V1C2Q8NEY4 427 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 OR8J2Q8NGG1 315 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 OR6K3Q8NGY3 331 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 FBXO27Q8NI29 283 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 MGARPQ8TDB4 240 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 ZC3HAV1LQ96H79 300 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 GMPPAQ96IJ6 420 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 OR51I1Q9H343 314 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 HAO1Q9UJM8 370 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 ICAM5Q9UMF0 924 aa14.07□□□□□ -0.16
CCDC88B-205ENST00000472524 DUXAA6NLW8 204 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 ESPNB1AK53 854 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 NPIPB9F8W1W9 429 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 C16orf97H3BN30 126 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 SS18L1O75177 396 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 CYP7B1O75881 506 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 UBL4AP11441 157 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 CD53P19397 219 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 NME5P56597 212 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 CARD18P57730 90 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 PHC1P78364 1004 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 SPANXN4Q5MJ08 99 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 ANKRD34AQ69YU3 496 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 TNFAIP8L2Q6P589 184 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 C16orf62Q7Z3J2 963 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 ROBO4Q8WZ75 1007 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 OSTF1Q92882 214 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 ARSGQ96EG1 525 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 MEAF6Q9HAF1 191 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF226Q9NYT6 803 aa14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 GPC6Q9Y625 555 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-205ENST00000472524 CENPVL1A0A0U1RR11 272 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 PRSS51A0A1B0GVH4 220 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 TMEM120BA0PK00 339 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 SERINC4A6NH21 518 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF195O14628 629 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ANKRD28O15084 1053 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 SIAH2O43255 324 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF264O43296 627 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 EFNA2O43921 213 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 STX11O75558 287 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 AK1P00568 194 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 TUBBP07437 444 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 OR12D1P0DN82 309 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 PRKCAP17252 672 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 UQCRC2P22695 453 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ELK4P28324 431 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 PCYT1AP49585 367 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 CLNS1AP54105 237 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 LTBQ06643 244 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF239Q16600 458 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ANXA8L1Q5VT79 327 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms