RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 HAPLN4Q86UW8 402 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TMPRSS12Q86WS5 348 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF130Q86XS8 419 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PTOV1Q86YD1 416 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 MFSD6LQ8IWD5 586 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PRSS58Q8IYP2 241 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM156Q8N614 296 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 EXD3Q8N9H8 876 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CHDHQ8NE62 594 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 STXBP6Q8NFX7 210 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 OR2D3Q8NGH3 330 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 OR2L8Q8NGY9 312 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 OR6X1Q8NH79 312 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SAP25Q8TEE9 199 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM170AQ8WVE7 144 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RNF133Q8WVZ7 376 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ADAMTS14Q8WXS8 1223 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 IFT81Q8WYA0 676 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SMPDL3AQ92484 453 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 BIRC7Q96CA5 298 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF333Q96JL9 665 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CSPG4P5Q96PW8 444 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 P2RY13Q9BPV8 354 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 WDR77Q9BQA1 342 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 NICN1Q9BSH3 213 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CADM1Q9BY67 442 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 GSDMCQ9BYG8 508 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 BCL2L14Q9BZR8 327 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PIGMQ9H3S5 423 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 C1orf198Q9H425 327 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ZDHHC4Q9NPG8 344 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PNRC2Q9NPJ4 139 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PARVAQ9NVD7 372 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LRWD1Q9UFC0 647 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LCMT1Q9UIC8 334 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ANAPC7Q9UJX3 599 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ABT1Q9ULW3 272 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LSM4Q9Y4Z0 139 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 FADS3Q9Y5Q0 445 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 MMP24Q9Y5R2 645 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TSSC4Q9Y5U2 329 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ZMYM6O95789 1325 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ATXN2Q99700 1313 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 A0A0J9YVX5 310 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 A0A1W2PPE3 182 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF729A6NN14 1252 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NPIPA7E9PJI5 369 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM189-UBE2V1I3L0A0 370 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 BTN3A3O00478 584 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 HSPA12AO43301 675 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LYPLA2O95372 231 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MOCS2O96007 188 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 F7P08709 466 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NPIPA8P0DM63 369 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NR2C1P13056 603 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 PPP2R1BP30154 601 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 CHRNA5P30532 468 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 IFNA8P32881 189 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 KDELR2P33947 212 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ACVR1BP36896 505 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 CRYBB2P43320 205 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 RGS6P49758 472 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 HMGCS2P54868 508 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 HERV-K104P63124 156 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 HERVK_113P63132 956 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ERVK-25P63136 954 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 CDR2Q01850 454 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 GABPAQ06546 454 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 RAD51Q06609 339 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 GRIK2Q13002 908 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 NFATC2Q13469 925 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MED21Q13503 144 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 GK3PQ14409 553 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 GRB14Q14449 540 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TMED2Q15363 201 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZBTB6Q15916 424 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 MRPL23Q16540 153 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 GUK1Q16774 197 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 QRICH1Q2TAL8 776 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM249Q2WGJ8 235 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF699Q32M78 642 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LINC01620Q4KN68 170 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM35AQ53FP2 167 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LIPKQ5VXJ0 399 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ALS2CLQ60I27 953 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 OR4F3Q6IEY1 312 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF770Q6IQ21 691 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ANKRD26P1Q6NSI1 321 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF530Q6P9A1 599 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LRRC31Q6UY01 552 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF562Q6V9R5 426 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 G2E3Q7L622 706 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 H2BFWTQ7Z2G1 175 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 LHFPL3Q86UP9 236 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 FUNDC1Q8IVP5 155 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC38A6Q8IZM9 456 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 CYP4Z2PQ8N1L4 340 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 SYS1Q8N2H4 156 aa4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 ZCCHC9Q8N567 271 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-210ENST00000468534 C8orf31Q8N9H6 132 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms