RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ATP12AP54707 1039 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 EPHA4P54764 986 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 CFHR1Q03591 330 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 NCF4Q15080 339 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 INAQ16352 499 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 OCLNQ16625 522 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 IGFN1Q86VF2 1251 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 SNX29P2Q8IUI4 249 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 THAP3Q8WTV1 239 aaPredicted RBP12.61□□□□□ -0.39
CLK3-203ENST00000454830 RFKQ969G6 155 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 HS6ST2Q96MM7 605 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 UBQLN3Q9H347 655 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 SLC25A19Q9HC21 320 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 CORINQ9Y5Q5 1042 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 SMIM30A4D0T7 59 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 KHNYNO15037 678 aaKnown RBP12.61□□□□□ -0.39
CLK3-203ENST00000454830 LAMTOR5O43504 91 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 HMGN1P05114 100 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 S100A5P33763 92 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 DAB2P98082 770 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 CSTF1Q05048 431 aaKnown RBP12.61□□□□□ -0.39
CLK3-203ENST00000454830 GUSBP11Q6P575 273 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 USP43Q70EL4 1123 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 CROCCP3Q8IVE0 287 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 UBALD2Q8IYN6 164 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 MAFAQ8NHW3 353 aaPredicted RBP12.61□□□□□ -0.39
CLK3-203ENST00000454830 C1GALT1C1Q96EU7 318 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 TRIM2Q9C040 744 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 C14orf105Q9NVL8 296 aa12.61□□□□□ -0.39
CLK3-203ENST00000454830 ZC3H12DA2A288 527 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 FAM86C2PA6NEL3 165 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 SOCS6O14544 535 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 CT45A8P0DMV1 189 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 CT45A9P0DMV2 189 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 ETV5P41161 510 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 GABRA4P48169 554 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 ETV1P50549 477 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 GXYLT1Q4G148 440 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 CT45A2Q5DJT8 189 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 CXXC5Q7LFL8 322 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 EID2Q8N6I1 236 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 ZNF563Q8TA94 476 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 DEPDC7Q96QD5 511 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 SMAD5Q99717 465 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 PRSS27Q9BQR3 290 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 NXF5Q9H1B4 397 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 IGHV3-20A0A0C4DH32 117 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 LRRN3E7EW58 273 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 SCDO00767 359 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 RCBTB2O95199 551 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 NR0B1P51843 470 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 PHF19Q5T6S3 580 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 ZNF550Q7Z398 422 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 LAPTM4BQ86VI4 370 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 TOR1AIP2Q8NFQ8 470 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 OR5M3Q8NGP4 307 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 OR4C6Q8NH72 309 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 CEP19Q96LK0 163 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 KCNS3Q9BQ31 491 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 GTPBP2Q9BX10 602 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 NUAK2Q9H093 628 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 LRRN3Q9H3W5 708 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 VPS13AQ96RL7 3174 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 A0A1W2PPC1 479 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 MAGEB3O15480 346 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 PPP1R3DO95685 299 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 MRPL3P09001 348 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 IL12BP29460 328 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 RORAP35398 523 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 GPLD1P80108 840 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 ZNF791Q3KP31 576 aaPredicted RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 C17orf82Q86X59 251 aaPredicted RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 ARHGEF39Q8N4T4 335 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 B4GALNT2Q8NHY0 566 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 SNRNP27Q8WVK2 155 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 PELOQ9BRX2 385 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 LMF2Q9BU23 707 aaKnown RBP12.6□□□□□ -0.39
CLK3-203ENST00000454830 ENKD1Q9H0I2 346 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 FLRT3Q9NZU0 649 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 COPS7AQ9UBW8 275 aa12.6□□□□□ -0.39
CLK3-203ENST00000454830 POLR1CO15160 346 aaPredicted RBP12.59□□□□□ -0.39
CLK3-203ENST00000454830 SOX6P35712 828 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 ZNF846Q147U1 533 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 DESI1Q6ICB0 168 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 DYNC2LI1Q8TCX1 351 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 TNFRSF13CQ96RJ3 184 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 SECISBP2Q96T21 854 aaKnown RBP12.59□□□□□ -0.39
CLK3-203ENST00000454830 DNAJB12Q9NXW2 375 aaKnown RBP12.59□□□□□ -0.39
CLK3-203ENST00000454830 IL20Q9NYY1 176 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 CTSFQ9UBX1 484 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 CACNA1CQ13936 2221 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 BLACEA4D250 179 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 SERINC4A6NH21 518 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 ADAM11O75078 769 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 GYPBP06028 91 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 PIPP12273 146 aaPredicted RBP12.59□□□□□ -0.39
CLK3-203ENST00000454830 KIRREL2Q6UWL6 708 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 FAM98AQ8NCA5 519 aaKnown RBP12.59□□□□□ -0.39
CLK3-203ENST00000454830 BCL7BQ9BQE9 202 aa12.59□□□□□ -0.39
CLK3-203ENST00000454830 TTTY10Q9BZA0 68 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms