RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LZICQ8WZA0 190 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 CRELD1Q96HD1 420 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 ZNF300Q96RE9 604 aaPredicted RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 TACO1Q9BSH4 297 aaKnown RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 HOXD1Q9GZZ0 328 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 AGPAT4Q9NRZ5 378 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 DEPPQ9NTK1 212 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 ENPP4Q9Y6X5 453 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 ZNF407Q9C0G0 2248 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 A0A1W2PQD3 144 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 PINLYPA6NC86 204 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 CPSF4LA6NMK7 179 aaKnown RBP10.02□□□□□ -0.81
SCN9A-205ENST00000454569 K7EM74 188 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 ICMTO60725 284 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 NEURL1O76050 574 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 LYPD3O95274 346 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 CST1P01037 141 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 NGFRP08138 427 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 PTNP21246 168 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 MST1P26927 711 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 LCN1P31025 176 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 RYKP34925 604 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 GCKP35557 465 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 ADH7P40394 386 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 CD97P48960 835 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 HLCSP50747 726 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 EFR3AQ14156 821 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 ENTPD8Q5MY95 495 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 TBPL2Q6SJ96 375 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 ZNF605Q86T29 641 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 GRAMD2AQ8IUY3 354 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 CATSPER1Q8NEC5 780 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 PAQR8Q8TEZ7 354 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 RASSF5Q8WWW0 418 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 TTC9Q92623 222 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 VCX3BQ9H321 246 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 MAN2C1Q9NTJ4 1040 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 HPF1Q9NWY4 346 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 ICAM5Q9UMF0 924 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 TESMINQ9Y4I5 508 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 U3KQV3 271 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 DNAJC13O75165 2243 aa10.02□□□□□ -0.81
SCN9A-205ENST00000454569 CLOCKO15516 846 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ZNF264O43296 627 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 HNRNPRO43390 633 aaKnown RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 NDUFB5O43674 189 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 HS6ST1O60243 411 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 PDGFAP04085 211 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 IFNW1P05000 195 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 UBL4AP11441 157 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 HPGDP15428 266 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 RRM2P31350 389 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 RRADP55042 308 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 RGS8P57771 180 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OC90Q02509 493 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 EPS8Q12929 822 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 TRIP10Q15642 601 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ATP6AP1Q15904 470 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ABHD17BQ5VST6 288 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 UNQ6494/PRO21346Q6UXR6 183 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 EPHX4Q8IUS5 362 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 APLFQ8IW19 511 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 CYP4Z2PQ8N1L4 340 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 WDSUB1Q8N9V3 476 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OR52J3Q8NH60 311 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 POP5Q969H6 163 aaKnown RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 TMCO6Q96DC7 493 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 MCHR1Q99705 422 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 TBL1XR1Q9BZK7 514 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ACER3Q9NUN7 267 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 MED11Q9P086 117 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 LRFN1Q9P244 771 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 TPRP12270 2363 aaKnown RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 K7ENP7 123 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 PDLIM1O00151 329 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 GTPBP1O00178 669 aaKnown RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 CASQ2O14958 399 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 CEACAM4O75871 244 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 FCGR1AP12314 374 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 PRKACGP22612 351 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 FASP25445 335 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 PEX2P28328 305 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 DNASE1L1P49184 302 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 TMED10P49755 219 aaKnown RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 GPR85P60893 370 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 PSPHP78330 225 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OR1Q1Q15612 314 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 LRRC36Q1X8D7 754 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 AGAP7PQ5VUJ5 663 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 SLC22A10Q63ZE4 541 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OR2T5Q6IEZ7 315 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 INO80CQ6PI98 192 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ISLR2Q6UXK2 745 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 WDR88Q6ZMY6 472 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 NKAIN4Q8IVV8 208 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ZNF527Q8NB42 609 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 ICA1LQ8NDH6 482 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OR4C15Q8NGM1 316 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 OR2T29Q8NH02 315 aa10.01□□□□□ -0.81
SCN9A-205ENST00000454569 AGAP4Q96P64 663 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms