RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.9■□□□□ 0.62
CHD3-204ENST00000439235 AGPAT4Q9NRZ5 378 aa18.9■□□□□ 0.62
CHD3-204ENST00000439235 C6orf203Q9P0P8 240 aaPredicted RBP18.9■□□□□ 0.62
CHD3-204ENST00000439235 STX18Q9P2W9 335 aaKnown RBP18.9■□□□□ 0.62
CHD3-204ENST00000439235 DNAJB9Q9UBS3 223 aa18.9■□□□□ 0.62
CHD3-204ENST00000439235 PCDHGB7Q9Y5F8 929 aa18.9■□□□□ 0.62
CHD3-204ENST00000439235 FAAHO00519 579 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 GNGT2O14610 69 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 SNPHO15079 494 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ADAMDEC1O15204 470 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 CLOCKO15516 846 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 DPM1O60762 260 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 LINGO3P0C6S8 592 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 PRG2P13727 222 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ANPEPP15144 967 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 PGCP20142 388 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 CNR1P21554 472 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ACAA2P42765 397 aaKnown RBP18.89■□□□□ 0.61
CHD3-204ENST00000439235 MASP1P48740 699 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 TAS2R41P59536 307 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 COPZ1P61923 177 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 HOXC5Q00444 222 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 COL28A1Q2UY09 1125 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 OR2T5Q6IEZ7 315 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 CBLN3Q6UW01 205 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 KDF1Q8NAX2 398 aaPredicted RBP18.89■□□□□ 0.61
CHD3-204ENST00000439235 OR2T29Q8NH02 315 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 NTNG2Q96CW9 530 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ARSGQ96EG1 525 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ZNF597Q96LX8 424 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 BDH2Q9BUT1 245 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 TMEM27Q9HBJ8 222 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 ICAM5Q9UMF0 924 aa18.89■□□□□ 0.61
CHD3-204ENST00000439235 KLF13Q9Y2Y9 288 aaPredicted RBP18.89■□□□□ 0.61
CHD3-204ENST00000439235 C2orf72A6NCS6 295 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 ANKUB1A6NFN9 424 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 CPSF4LA6NMK7 179 aaKnown RBP18.88■□□□□ 0.61
CHD3-204ENST00000439235 DIRAS1O95057 198 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 OR5F1O95221 314 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 NUDT14O95848 222 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 ITGB2P05107 769 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 RYKP34925 604 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 YAP1P46937 504 aaKnown RBP18.88■□□□□ 0.61
CHD3-204ENST00000439235 SMIM11AP58511 58 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 SPIBQ01892 262 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 TBR1Q16650 682 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 ENTPD8Q5MY95 495 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 SLC25A25Q6KCM7 469 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 OR4K17Q8NGC6 315 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 DTNBP1Q96EV8 351 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 PKP2Q99959 881 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 FAM173AQ9BQD7 235 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 FNDC11Q9BVV2 318 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 PROK2Q9HC23 129 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 RPS6KB2Q9UBS0 482 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 ACAD8Q9UKU7 415 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 A4GNTQ9UNA3 340 aa18.88■□□□□ 0.61
CHD3-204ENST00000439235 FAM47E-STBD1D6RA91 191 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 G3V3Y1 287 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 J3KTA2 159 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 NME2P1O60361 137 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 TPST2O60704 377 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 SP1P08047 785 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 NME2P22392 152 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 ELAVL4P26378 380 aaKnown RBP18.87■□□□□ 0.61
CHD3-204ENST00000439235 HTR2AP28223 471 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 TNFSF10P50591 281 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 GK3PQ14409 553 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 OR1Q1Q15612 314 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 ZNF613Q6PF04 617 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 ZNF605Q86T29 641 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 PLCZ1Q86YW0 608 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 OFCC1Q8IZS5 231 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 ZADH2Q8N4Q0 377 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 LSMEM1Q8N8F7 131 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 TMEM178AQ8NBL3 297 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 OR1J4Q8NGS1 313 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 ZNF563Q8TA94 476 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 CENPNQ96H22 339 aaPredicted RBP18.87■□□□□ 0.61
CHD3-204ENST00000439235 PTGES2Q9H7Z7 377 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 REEP1Q9H902 201 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 SELENONQ9NZV5 590 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 RIMS3Q9UJD0 308 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 BOKQ9UMX3 212 aaPredicted RBP18.87■□□□□ 0.61
CHD3-204ENST00000439235 TESMINQ9Y4I5 508 aa18.87■□□□□ 0.61
CHD3-204ENST00000439235 USP24Q9UPU5 2620 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 TRAPPC13A5PLN9 417 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 C17orf51A8MQB3 221 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 GNB5O14775 395 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 ADAM11O75078 769 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 SEMA7AO75326 666 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 TRIM3O75382 744 aaPredicted RBP18.86■□□□□ 0.61
CHD3-204ENST00000439235 H1F0P07305 194 aaKnown RBP18.86■□□□□ 0.61
CHD3-204ENST00000439235 THRBP10828 461 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 RRM2P31350 389 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 DNASE1L1P49184 302 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 ST3GAL3Q11203 375 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 PIN1Q13526 163 aaPredicted RBP18.86■□□□□ 0.61
CHD3-204ENST00000439235 WBP2NLQ6ICG8 309 aa18.86■□□□□ 0.61
CHD3-204ENST00000439235 OR5M10Q6IEU7 315 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms