RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 E2F1Q01094 437 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 BNC1Q01954 994 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 PRKCDQ05655 676 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 USP53Q70EK8 1073 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 RAB43Q86YS6 212 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GCDHQ92947 438 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 BPIFA2Q96DR5 249 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 ERMAPQ96PL5 475 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 MIXL1Q9H2W2 232 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 NUDT14O95848 222 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 MEDAGQ5VYS4 303 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 TMEM53Q6P2H8 277 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 ABHD13Q7L211 337 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 KLHL36Q8N4N3 616 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 CAMKVQ8NCB2 501 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 ALG8Q9BVK2 526 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 SYNDIG1Q9H7V2 258 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 RANGRFQ9HD47 186 aaPredicted RBP12.42□□□□□ -0.42
VPS54-203ENST00000409558 UNC119BA6NIH7 251 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 H7C1C5 153 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 IDH3BO43837 385 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 PRICKLE3O43900 615 aaPredicted RBP12.42□□□□□ -0.42
VPS54-203ENST00000409558 LCN6P62502 163 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 DSG2Q14126 1118 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 FAM53BQ14153 422 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 OR5M3Q8NGP4 307 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 PIGKQ92643 395 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 OSTF1Q92882 214 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 TGM7Q96PF1 710 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 TSSK2Q96PF2 358 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 UGT2A1Q9Y4X1 527 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 RAD1O60671 282 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 SAMD12Q8N8I0 201 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 OR4C6Q8NH72 309 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 C10orf90Q96M02 699 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 PNO1Q9NRX1 252 aaKnown RBP12.42□□□□□ -0.42
VPS54-203ENST00000409558 ZNF221Q9UK13 617 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 DMDP11532 3685 aa12.42□□□□□ -0.42
VPS54-203ENST00000409558 TRAV6A0A075B6T7 132 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 FAM240BA0A1B0GVZ2 78 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PRR23D1E9PI22 279 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 PRR23D2P0DMB1 279 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 HPGDP15428 266 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SCN1BQ07699 218 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 DMPKQ09013 629 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ALG10BQ5I7T1 473 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ZNF620Q6ZNG0 422 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 OR8K3Q8NH51 312 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 C4orf36Q96KX1 117 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 MAP3K3Q99759 626 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 RPS6KB2Q9UBS0 482 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PLEKHB1Q9UF11 243 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 LIPT1Q9Y234 373 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 V9GYH0 126 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SURF4O15260 269 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 CHST10O43529 356 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 MRPS14O60783 128 aaKnown RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 AKT2P31751 481 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 NATD1Q8N6N6 113 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 BCL2L10Q9HD36 194 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ERVK-19Q9WJR5 959 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 HEBP2Q9Y5Z4 205 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 URADA6NGE7 173 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 IDSB3KWA1 339 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 DOK2O60496 412 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 CSF3P09919 207 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ZGLP1P0C6A0 271 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 BMP8BP34820 402 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 OR1D4P47884 311 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 POU6F2P78424 691 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 PRR23CQ6ZRP0 262 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 BMP8AQ7Z5Y6 402 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SLC37A3Q8NCC5 494 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PMEPA1Q969W9 287 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SLC22A18Q96BI1 424 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 DEPDC7Q96QD5 511 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PPIL3Q9H2H8 161 aaKnown RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 TMEM27Q9HBJ8 222 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PAQR5Q9NXK6 330 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 CALML5Q9NZT1 146 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 LRIT1Q9P2V4 623 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 EXTL2Q9UBQ6 330 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 OCLNQ16625 522 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 DEFB133Q30KQ1 61 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ZFP69Q49AA0 526 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 CEACAM19Q7Z692 300 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SERPINA12Q8IW75 414 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SLC22A18ASQ8N1D0 253 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 THAP3Q8WTV1 239 aaPredicted RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 RFKQ969G6 155 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 SLC25A46Q96AG3 418 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PPP1R14BQ96C90 147 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 OR8D2Q9GZM6 311 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 MCOLN1Q9GZU1 580 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ANKHQ9HCJ1 492 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 LYARQ9NX58 379 aaKnown RBP12.41□□□□□ -0.42
VPS54-203ENST00000409558 ZSCAN32Q9NX65 697 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 CLEC1BQ9P126 229 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 PHF11Q9UIL8 331 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 ACAD8Q9UKU7 415 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms