RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CAPGP40121 348 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SOX3P41225 446 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 LIMS1P48059 325 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TMED10P49755 219 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 HMGA2P52926 109 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ALDH6A1Q02252 535 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 TRAM2Q15035 370 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 PDK3Q15120 406 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ATP1A1-AS1Q5TC04 95 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 B3GNTL1Q67FW5 361 aaPredicted RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 KDM4DQ6B0I6 523 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 POMZP3Q6PJE2 187 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ZNF550Q7Z398 422 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 RPS19BP1Q86WX3 136 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 NRMQ8IXM6 262 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TMEM156Q8N614 296 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 POGLUT1Q8NBL1 392 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ZNF563Q8TA94 476 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 M1APQ8TC57 530 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 DUSP19Q8WTR2 217 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TMCO6Q96DC7 493 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 NODALQ96S42 347 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ZNF559Q9BR84 538 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 MMP25Q9NPA2 562 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 PAPOLBQ9NRJ5 636 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 USE1Q9NZ43 259 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SELENONQ9NZV5 590 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TESQ9UGI8 421 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 SLC35A3Q9Y2D2 325 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 BOD1L1Q8NFC6 3051 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ANKRD11Q6UB99 2663 aaPredicted RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 A0A087WUU8 490 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 A0A1B0GWA3 101 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SH3PXD2BA1X283 911 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 CDRT15L2A8MXV6 281 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 H3BN98 237 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 CDC40O60508 579 aaKnown RBP eCLIP3.4□□□□□ -1.87
RTN4-208ENST00000404909 OR6B1O95007 311 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 OR5F1O95221 314 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SOX14O95416 240 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 F10P00742 488 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 GUSBP08236 651 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 PRKAR1AP10644 381 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ICAM2P13598 275 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 CDH2P19022 906 aaPredicted RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 CCNA2P20248 432 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TCEA1P23193 301 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 ITGA3P26006 1051 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ACAA2P42765 397 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 IDH2P48735 452 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 CLK3P49761 638 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 ZNF117Q03924 483 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 Q0VFX4 171 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 FOXC1Q12948 553 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SRSF6Q13247 344 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 RAPSNQ13702 412 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 EFR3AQ14156 821 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 SLC36A3Q495N2 470 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ALG10BQ5I7T1 473 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 PRAMEF20Q5VT98 475 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 FAHD1Q6P587 224 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 Q6ZPB1 254 aaPredicted RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 RAB43Q86YS6 212 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 APLFQ8IW19 511 aaPredicted RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 CMIPQ8IY22 773 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 BRIX1Q8TDN6 353 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 ASB15Q8WXK1 588 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 FAM46AQ96IP4 442 aaKnown RBP3.4□□□□□ -1.87
RTN4-208ENST00000404909 MUS81Q96NY9 551 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 MBOAT4Q96T53 435 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 TRIM2Q9C040 744 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 GABARAPL1Q9H0R8 117 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 METTL7AQ9H8H3 244 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ASCL3Q9NQ33 180 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 FAM118AQ9NWS6 357 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 UBAP1Q9NZ09 502 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 CNIH4Q9P003 139 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 ALPK2Q86TB3 2170 aa3.4□□□□□ -1.87
RTN4-208ENST00000404909 LOC100130705A0A1B0GUX0 176 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 TRABD2BA6NFA1 517 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ALG1L2C9J202 215 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 G3V3Y1 287 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 DENRO43583 198 aaKnown RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 PIP5K1CO60331 668 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 NADKO95544 446 aaPredicted RBP3.39□□□□□ -1.87
RTN4-208ENST00000404909 HPP00738 406 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 LIFP15018 202 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 GPR4P46093 362 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SSR4P51571 173 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 UGT2B15P54855 530 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 NPRL3Q12980 569 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 SKP2Q13309 424 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 RFX4Q33E94 735 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 AP1ARQ63HQ0 302 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 PGBD2Q6P3X8 592 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 WDR88Q6ZMY6 472 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 ZER1Q7Z7L7 766 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 DTX1Q86Y01 620 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 GRAMD2AQ8IUY3 354 aa3.39□□□□□ -1.87
RTN4-208ENST00000404909 CACTIN-AS1Q8N1I8 211 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms