RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GXYLT1Q4G148 440 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 ACSM3Q53FZ2 586 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 GRASPQ7Z6J2 395 aaPredicted RBP19.48■□□□□ 0.71
CTCF-202ENST00000401394 OR2T4Q8NH00 348 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 OR52N1Q8NH53 320 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 FN3KQ9H479 309 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 EPHX3Q9H6B9 360 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 FOLH1BQ9HBA9 442 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 KIAA1549LQ6ZVL6 1849 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 ZNF860A6NHJ4 632 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 SIGLEC5O15389 551 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 KLF4O43474 513 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 ANXA3P12429 323 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 SIGLEC14Q08ET2 396 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 RIN1Q13671 783 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 HYAL4Q2M3T9 481 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 ZNF836Q6ZNA1 936 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 BPHLQ86WA6 291 aaPredicted RBP19.48■□□□□ 0.71
CTCF-202ENST00000401394 GRHL3Q8TE85 626 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 GANCQ8TET4 914 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 MS4A7Q9GZW8 240 aaPredicted RBP19.48■□□□□ 0.71
CTCF-202ENST00000401394 OR10A4Q9H209 315 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 SLC6A20Q9NP91 592 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 ASB6Q9NWX5 421 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 PRKAG2Q9UGJ0 569 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 OR7A10O76100 309 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 NPR2P20594 1047 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 DNASE1P24855 282 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ATP5A1P25705 553 aaKnown RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 PSMB10P40306 273 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ST8SIA6P61647 398 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 OC90Q02509 493 aaPredicted RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 GSG1Q2KHT4 349 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 PUS10Q3MIT2 529 aaKnown RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 FRRS1Q6ZNA5 592 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 CHFRQ96EP1 664 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 PDCD1LG2Q9BQ51 273 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 SPATA5L1Q9BVQ7 753 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 IFT27Q9BW83 186 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ZNF346Q9UL40 294 aaKnown RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 ZNF593O00488 134 aaPredicted RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 CXCL10P02778 98 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 CISD3P0C7P0 127 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 NAA10P41227 235 aaPredicted RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 MTNR1BP49286 362 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 BTN3A2P78410 334 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 SRSF5Q13243 272 aaKnown RBP19.47■□□□□ 0.71
CTCF-202ENST00000401394 SNTA1Q13424 505 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 TJAP1Q5JTD0 557 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 NRSN1Q8IZ57 195 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 FANK1Q8TC84 345 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 DDOQ99489 341 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 PRSS27Q9BQR3 290 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 SEC22CQ9BRL7 303 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 DPAGT1Q9H3H5 408 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ADAM30Q9UKF2 790 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 LRRN3E7EW58 273 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 TSPAN4O14817 238 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ZNF85Q03923 595 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 CRMP1Q14194 572 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ZNF77Q15935 545 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 MBOAT2Q6ZWT7 520 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 PXYLP1Q8TE99 480 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 GIMAP5Q96F15 307 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 SLC25A18Q9H1K4 315 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 LRRN3Q9H3W5 708 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ERVMER34-1Q9H9K5 563 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 DLL4Q9NR61 685 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 KCNE5Q9UJ90 142 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 ENTPD4Q9Y227 616 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 INSL6Q9Y581 213 aa19.47■□□□□ 0.71
CTCF-202ENST00000401394 C7orf66A4D0T2 115 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 SHOXO15266 292 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 TPOP07202 933 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 HOXD10P28358 340 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 GRPRP30550 384 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 AP2S1P53680 142 aaPredicted RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 TRMT12Q53H54 448 aaKnown RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 ABHD17CQ6PCB6 329 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 MEPCEQ7L2J0 689 aaKnown RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 ADAMTS15Q8TE58 950 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 ZNRF4Q8WWF5 429 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 RIT1Q92963 219 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 ZMYND19Q96E35 227 aaPredicted RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 SORCS2Q96PQ0 1159 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 TEAD3Q99594 435 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 ZBP1Q9H171 429 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 SIDT1Q9NXL6 827 aaKnown RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 WDFY3Q8IZQ1 3526 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 C4orf47A7E2U8 309 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 PAK4O96013 591 aaPredicted RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 IFNGR2P38484 337 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 DUSP5Q16690 384 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 PRPF38BQ5VTL8 546 aaKnown RBP19.46■□□□□ 0.71
CTCF-202ENST00000401394 BICRALQ6AI39 1079 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 BHLHB9Q6PI77 547 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 FIGNL1Q6PIW4 674 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 FTMTQ8N4E7 242 aa19.46■□□□□ 0.71
CTCF-202ENST00000401394 PGLYRP3Q96LB9 341 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms