RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MS4A4EQ96PG1 132 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PITX2Q99697 317 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 SYT3Q9BQG1 590 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PRICKLE3O43900 615 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 KCNK5O95279 499 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 HRGP04196 525 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 RPS15AP62244 130 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 LDLRAD1Q5T700 205 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF440Q8IYI8 595 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ISL2Q96A47 359 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 FOXRED1Q96CU9 486 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF442Q9H7R0 627 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ZFP57Q9NU63 452 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 B3GNT2Q9NY97 397 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 RPS19P39019 145 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ELAVL3Q14576 367 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 SOWAHCQ53LP3 525 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC9B2Q86UD5 537 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 CD163Q86VB7 1156 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 CSNK1A1LQ8N752 337 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PRRT1Q99946 306 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 B3GAT2Q9NPZ5 323 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 NAALAD2Q9Y3Q0 740 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 CACNA1SQ13698 1873 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 SIPA1L3O60292 1781 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 KCNJ13O60928 360 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 PIM1P11309 404 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 PGCP20142 388 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 SHC2P98077 582 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 DHCR24Q15392 516 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 C3orf38Q5JPI3 329 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 HORMAD2Q8N7B1 307 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 SFXN5Q8TD22 340 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 GLYATL2Q8WU03 294 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 SMAP2Q8WU79 429 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 NIPSNAP1Q9BPW8 284 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 HLA-AP01891 365 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 TAS2R31P59538 309 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF169Q14929 603 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 CARD17Q5XLA6 110 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 RAB7BQ96AH8 199 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC7A11Q9UPY5 501 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 TIMM8BQ9Y5J9 83 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 GJB3O75712 270 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 PLCXD2Q0VAA5 305 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 MICU1Q9BPX6 476 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 WASF3Q9UPY6 502 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 DDX60Q8IY21 1712 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 OR7A17O14581 309 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 TRAPPC2P0DI81 140 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 TRAPPC2BP0DI82 140 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 KIAA1024LP59773 190 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 PRPS1P60891 318 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 C6orf132Q5T0Z8 1188 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 MAMDC2Q7Z304 686 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 GSX2Q9BZM3 304 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 KNL1Q8NG31 2342 aa18.34■□□□□ 0.53
CCDC88B-202ENST00000356786 TSPAN11A1L157 253 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 RAB40ALP0C0E4 278 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 SHC1P29353 583 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 CDRT4Q8N9R6 151 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 STEAP2Q8NFT2 490 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 RAB40AQ8WXH6 277 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 TUBB1Q9H4B7 451 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 SLAMF7Q9NQ25 335 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 FBXO8Q9NRD0 319 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 ZNF225Q9UK10 706 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 SNX11Q9Y5W9 270 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 MYO9BQ13459 2157 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 SYT7O43581 403 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 HOXB2P14652 356 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 NR0B1P51843 470 aaKnown RBP18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 KDM4DQ6B0I6 523 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 ASB11Q8WXH4 323 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 ZIC5Q96T25 663 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 C11orf84Q9BUA3 381 aaPredicted RBP18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 INPP5EQ9NRR6 644 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 B3GALT1Q9Y5Z6 326 aa18.33■□□□□ 0.53
CCDC88B-202ENST00000356786 RPS10-NUDT3A0A1W2PQS6 291 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 IGLON5A6NGN9 336 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SDC3O75056 442 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SULT1C4O75897 302 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 AOAHP28039 575 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 RPS10P46783 165 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 FAM83HQ6ZRV2 1179 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SMIM3Q9BZL3 60 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 RNF167Q9H6Y7 350 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 KCNS2Q9ULS6 477 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 OR1A2Q9Y585 309 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 IFNA4P05014 189 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 TPMTP51580 245 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 ILKQ13418 452 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SQSTM1Q13501 440 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SGPP2Q8IWX5 399 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 IL17RDQ8NFM7 739 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 OR8J2Q8NGG1 315 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 SLCO4A1Q96BD0 722 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 UHRF1Q96T88 793 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 PKMYT1Q99640 499 aa18.33■□□□□ 0.52
CCDC88B-202ENST00000356786 PELI2Q9HAT8 420 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms