RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 CDK20Q8IZL9 346 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 C19orf47Q8N9M1 422 aaKnown RBP13.47□□□□□ -0.25
TPM3-206ENST00000330188 GRHL3Q8TE85 626 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 DNAJA4Q8WW22 397 aaPredicted RBP13.47□□□□□ -0.25
TPM3-206ENST00000330188 AP3S1Q92572 193 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 KISS1RQ969F8 398 aaPredicted RBP13.47□□□□□ -0.25
TPM3-206ENST00000330188 NACC2Q96BF6 587 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 DIRAS2Q96HU8 199 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 LMF2Q9BU23 707 aaKnown RBP13.47□□□□□ -0.25
TPM3-206ENST00000330188 HDHD5Q9BXW7 423 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 FOLH1BQ9HBA9 442 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 TMEM27Q9HBJ8 222 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 CMC2Q9NRP2 79 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 ASB6Q9NWX5 421 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 SLCO1B1Q9Y6L6 691 aa13.47□□□□□ -0.25
TPM3-206ENST00000330188 A0A0B4J2E0 115 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 A0A1B0GX12 115 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 A0A1W2PQ09 198 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 TMEM221A6NGB7 291 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 C12orf71A8MTZ7 269 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 CHP2O43745 196 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 IGKV1D-16P01601 117 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 HLA-DPB1P04440 258 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 BMP8BP34820 402 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 RFX2P48378 723 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 TMED10P49755 219 aaKnown RBP13.46□□□□□ -0.25
TPM3-206ENST00000330188 EMDP50402 254 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 FOXK2Q01167 660 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 SRSF5Q13243 272 aaKnown RBP13.46□□□□□ -0.25
TPM3-206ENST00000330188 INSL4Q14641 139 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 PRPF38BQ5VTL8 546 aaKnown RBP13.46□□□□□ -0.25
TPM3-206ENST00000330188 Q6ZS52 159 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 BMP8AQ7Z5Y6 402 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 CAMKK1Q8N5S9 505 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 ACBD7Q8N6N7 88 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 TMEM99Q8N816 258 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 AVL9Q8NBF6 648 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 ATP6V1C2Q8NEY4 427 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 ABHD8Q96I13 439 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 NEDD4LQ96PU5 975 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 PHOX2BQ99453 314 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 TIMP4Q99727 224 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 GPR174Q9BXC1 333 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 EVA1AQ9H8M9 152 aa13.46□□□□□ -0.25
TPM3-206ENST00000330188 ISG20L2Q9H9L3 353 aaKnown RBP13.46□□□□□ -0.25
TPM3-206ENST00000330188 TRAV27A0A087WT01 109 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 A0A0A6YYC8 382 aaPredicted RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 SHISA3A0PJX4 238 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 FABP12A6NFH5 140 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 B4DGG1 531 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 I3L1I5 382 aaPredicted RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 ADAM11O75078 769 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 SAGP10523 405 aaPredicted RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 PAICSP22234 425 aaKnown RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 BDH1Q02338 343 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 DBPQ10586 325 aaPredicted RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 PRTGQ2VWP7 1150 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 GRAMD2AQ8IUY3 354 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 MCATQ8IVS2 390 aaKnown RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 ZNF614Q8N883 585 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 OR4N2Q8NGD1 307 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 IFT27Q9BW83 186 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 DNAJB12Q9NXW2 375 aaKnown RBP13.46□□□□□ -0.26
TPM3-206ENST00000330188 HCN3Q9P1Z3 774 aa13.46□□□□□ -0.26
TPM3-206ENST00000330188 CEP290O15078 2479 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 A0A1B0GWA3 101 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 FAM86C2PA6NEL3 165 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 CCDC182A6NF36 153 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 CD8B2A6NJW9 211 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 DYRK3O43781 588 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 PTP4A3O75365 173 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 SOX30O94993 753 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 GUSBP08236 651 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 CSF3P09919 207 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 CD8BP10966 210 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 ACAA2P42765 397 aaKnown RBP13.45□□□□□ -0.26
TPM3-206ENST00000330188 ARMC4Q5T2S8 1044 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 GDPD1Q8N9F7 314 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 SLC37A3Q8NCC5 494 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 NEIL3Q8TAT5 605 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 PTP4A1Q93096 173 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 PTCHD1Q96NR3 888 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 LRRC61Q9BV99 259 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 ALG8Q9BVK2 526 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 POLHQ9Y253 713 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 DTX4Q9Y2E6 619 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 A0A1W2PPC4 97 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 SLC9B1P1A6NJY1 282 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 PRR23D1E9PI22 279 aaPredicted RBP13.45□□□□□ -0.26
TPM3-206ENST00000330188 HRKO00198 91 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 POLR1CO15160 346 aaPredicted RBP13.45□□□□□ -0.26
TPM3-206ENST00000330188 RNF13O43567 381 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 PRR23D2P0DMB1 279 aaPredicted RBP13.45□□□□□ -0.26
TPM3-206ENST00000330188 PPP3R1P63098 170 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 GPR50Q13585 617 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 ZNHIT3Q15649 155 aaPredicted RBP13.45□□□□□ -0.26
TPM3-206ENST00000330188 KLHL12Q53G59 568 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 AGAP6Q5VW22 663 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 TMEM91Q6ZNR0 172 aa13.45□□□□□ -0.26
TPM3-206ENST00000330188 KIAA1143Q96AT1 154 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms