RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RPL22L1Q6P5R6 122 aaKnown RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 LIPIQ6XZB0 460 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 VRK3Q8IV63 474 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 C12orf45Q8N5I9 185 aaPredicted RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 RASGEF1AQ8N9B8 481 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ABHD4Q8TB40 342 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ISYNA1Q9NPH2 558 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 SPATA6Q9NWH7 488 aaPredicted RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 SYN1P17600 705 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 M6PRP20645 277 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 MMP11P24347 488 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 PBX2P40425 430 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 RIDAP52758 137 aaKnown RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 SEC13P55735 322 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 IRF4Q15306 451 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 SLC6A19Q695T7 634 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 TMEM150AQ86TG1 271 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 FAM46BQ96A09 425 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 CAPNS2Q96L46 248 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 PDFQ9HBH1 243 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 IER3IP1Q9Y5U9 82 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 SFTPBP07988 381 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 POLR2CP19387 275 aaPredicted RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 CCKBRP32239 447 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ETV5P41161 510 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ETV1P50549 477 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 C1QTNF12Q5T7M4 302 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 TCEAL8Q8IYN2 117 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 CHMP1AQ9HD42 196 aaPredicted RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 BIN3Q9NQY0 253 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 SCGNO76038 276 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ITGA5P08648 1049 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 PRPS1P60891 318 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 PRRT3Q5FWE3 981 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 PDXPQ96GD0 296 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 TRMT2BQ96GJ1 504 aaKnown RBP18.1■□□□□ 0.49
USP48-201ENST00000308271 RBP7Q96R05 134 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 SLC38A3Q99624 504 aa18.1■□□□□ 0.49
USP48-201ENST00000308271 ARRDC5A6NEK1 342 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 KLKB1P03952 638 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 RAF1P04049 648 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 CERS1P27544 350 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 CLDN20P56880 219 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 HTR3DQ70Z44 454 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 KIAA1958Q8N8K9 716 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 ZNF454Q8N9F8 522 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 DCLRE1CQ96SD1 692 aaKnown RBP18.09■□□□□ 0.49
USP48-201ENST00000308271 KATNB1Q9BVA0 655 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 GPR34Q9UPC5 381 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 LAMB2P55268 1798 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 SGSHP51688 502 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 PDE7AQ13946 482 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 FCRLAQ7L513 359 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 ZNF546Q86UE3 836 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 RNF113BQ8IZP6 322 aaKnown RBP18.09■□□□□ 0.49
USP48-201ENST00000308271 SDR9C7Q8NEX9 313 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 OR2M4Q96R27 311 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 OR2A14Q96R47 310 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 ZNF225Q9UK10 706 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 NPC1O15118 1278 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 FGF18O76093 207 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 PSMB10P40306 273 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 SLC6A12P48065 614 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 GHSRQ92847 366 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 SEC61A2Q9H9S3 476 aa18.09■□□□□ 0.49
USP48-201ENST00000308271 USP36Q9P275 1121 aaKnown RBP18.09■□□□□ 0.49
USP48-201ENST00000308271 TRABD2BA6NFA1 517 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 C11orf98E9PRG8 122 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 SOX1O00570 391 aaPredicted RBP18.08■□□□□ 0.49
USP48-201ENST00000308271 SLCO2B1O94956 709 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 AKR1C4P17516 323 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 SOX9P48436 509 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 EVX1P49640 407 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 BLKP51451 505 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 CHRNEQ04844 493 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 RBMS2Q15434 407 aaKnown RBP18.08■□□□□ 0.49
USP48-201ENST00000308271 PUS10Q3MIT2 529 aaKnown RBP18.08■□□□□ 0.49
USP48-201ENST00000308271 PXDC1Q5TGL8 231 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 SVBPQ8N300 66 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 OR1J4Q8NGS1 313 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 DTD2Q96FN9 168 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 C1GALT1Q9NS00 363 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 GYPBP06028 91 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 DSC1Q08554 894 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 C6orf132Q5T0Z8 1188 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 ZNF852Q6ZMS4 543 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 CFAP77Q6ZQR2 320 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 PXKQ7Z7A4 578 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 OR6T1Q8NGN1 323 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 ANKRD19PQ9H560 264 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 KCNIP3Q9Y2W7 256 aa18.08■□□□□ 0.49
USP48-201ENST00000308271 A8MUA0 341 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 ERCC1P07992 297 aaPredicted RBP18.08■□□□□ 0.48
USP48-201ENST00000308271 HIST1H1TP22492 207 aaPredicted RBP18.08■□□□□ 0.48
USP48-201ENST00000308271 CTXN1P60606 82 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 TLE2Q04725 743 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 PRSS58Q8IYP2 241 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 LMF1Q96S06 567 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 PKMYT1Q99640 499 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 ZNF416Q9BWM5 594 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms