RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 HNRNPCL4P0DMR1 293 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 MSR1P21757 451 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CX3CR1P49238 355 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CCL7P80098 99 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CNPY1Q3B7I2 92 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CDONQ4KMG0 1287 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 GID4Q8IVV7 300 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 MINDY1Q8N5J2 469 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 OR5H2Q8NGV7 314 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ATP13A2Q9NQ11 1180 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF443Q9Y2A4 671 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 KIR2DS5A0A0G2JLQ3 304 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 A0A0G2JNG1 304 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 KIR2DS3K7RE56 304 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PIP5K1CO60331 668 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF182P17025 639 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 RBM34P42696 430 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 KIR2DS5Q14953 304 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 KDELC1Q6UW63 502 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 FTMTQ8N4E7 242 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PRDM9Q9NQV7 894 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 FMN2Q9NZ56 1722 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 HMX3A6NHT5 357 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 GLSO94925 669 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 FAM157BP0CG42 384 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ARAFP10398 606 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PROZP22891 400 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 POLR2HP52434 150 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ERVK-16P61578 105 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 OR1Q1Q15612 314 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PIGWQ7Z7B1 504 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CPOQ8IVL8 374 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 APLFQ8IW19 511 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 OR4K15Q8NH41 348 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TRMT61AQ96FX7 289 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 NKX3-1Q99801 234 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 AIG1Q9NVV5 245 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TRAPPC2LQ9UL33 140 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 MDFIC2A0A1B0GVS7 189 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 AQP12BA6NM10 295 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 LSM1O15116 133 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 B4GAT1O43505 415 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 FCGR2AP12318 317 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 HRH2P25021 359 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 CAV3P56539 151 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 DNAJB13P59910 316 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 RAB11BQ15907 218 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 SLC22A25Q6T423 547 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 AQP12AQ8IXF9 295 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 MS4A4EQ96PG1 132 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PLA2G2FQ9BZM2 168 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 OLAHQ9NV23 265 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 LHX3Q9UBR4 397 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PRRT4C9JH25 899 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 RGS9O75916 674 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 DDCP20711 480 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PPP5CP53041 499 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PPIAP62937 165 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 GABREP78334 506 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 GAB1Q13480 694 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 RICTORQ6R327 1708 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF836Q6ZNA1 936 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 BBS1Q8NFJ9 593 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TCTN2Q96GX1 697 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TUBA1CQ9BQE3 449 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 DDX31Q9H8H2 851 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 PELI2Q9HAT8 420 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TREM2Q9NZC2 230 aa7.3□□□□□ -1.24
SCN9A-201ENST00000303354 TESQ9UGI8 421 aaKnown RBP7.3□□□□□ -1.24
SCN9A-201ENST00000303354 IFNA5P01569 189 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 AMY2AP04746 511 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SLC2A1P11166 492 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 ENPP1P22413 925 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 POU4F3Q15319 338 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 UBAC2Q8NBM4 344 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 BCL7CQ8WUZ0 217 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 VN1R3Q9BXE9 311 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 AQP7O14520 342 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 AIFM1O95831 613 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 MAPK3P27361 379 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 DAP3P51398 398 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 EXOSC6Q5RKV6 272 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SFRP5Q5T4F7 317 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TBPL2Q6SJ96 375 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TMIEQ8NEW7 156 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 GOT1L1Q8NHS2 421 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 OR1E3Q8WZA6 343 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 KHSRPQ92945 711 aaKnown RBP eCLIP7.29□□□□□ -1.242e-7■■■■□ 23.6
SCN9A-201ENST00000303354 A3GALT2U3KPV4 340 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 NPC1O15118 1278 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 LGALS4P56470 323 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 CXADRP78310 365 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SLC7A9P82251 487 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 BEX5Q5H9J7 111 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 ESPNLQ6ZVH7 1005 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 OR2T4Q8NH00 348 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 STT3BQ8TCJ2 826 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 CDC6Q99741 560 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 WDR83Q9BRX9 315 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 IL17CQ9P0M4 197 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms