RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FTHL17Q9BXU8 183 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 RSPO3Q9BXY4 272 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 COMMD4Q9H0A8 199 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MAGT1Q9H0U3 335 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 SLC25A51Q9H1U9 297 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MMADHCQ9H3L0 296 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 PTGES2Q9H7Z7 377 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 NANOGQ9H9S0 305 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 GRPEL1Q9HAV7 217 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 APMAPQ9HDC9 416 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 SH2D2AQ9NP31 389 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MID1IP1Q9NPA3 183 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 TRPV5Q9NQA5 729 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 PAK1IP1Q9NWT1 392 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 SMPD3Q9NY59 655 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 UTP6Q9NYH9 597 aaKnown RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 CD274Q9NZQ7 290 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 STOX2Q9P2F5 926 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 ERVK-18Q9QC07 812 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MTRRQ9UBK8 725 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 GHRLQ9UBU3 117 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 COPS7AQ9UBW8 275 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MARCOQ9UEW3 520 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 FAM153AQ9UHL3 310 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 XPO7Q9UIA9 1087 aaKnown RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 PHF11Q9UIL8 331 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 DNPEPQ9ULA0 475 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 ZNF490Q9ULM2 529 aaPredicted RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 UBQLN1Q9UMX0 589 aaKnown RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 B9D1Q9UPM9 204 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 FOXJ3Q9UPW0 622 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 SCML2Q9UQR0 700 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 SLC9A8Q9Y2E8 581 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 GMPPBQ9Y5P6 360 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 SNX5Q9Y5X3 404 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 DYNC1LI1Q9Y6G9 523 aaKnown RBP0.2□□□□□ -2.38
VPS35-212ENST00000640313 CHD4Q14839 1912 aa0.2□□□□□ -2.38
VPS35-212ENST00000640313 MUC16Q8WXI7 14507 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CCDC7Q96M83 1385 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ANKRD30BQ9BXX2 1392 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SHANK1Q9Y566 2161 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ASTN1O14525 1302 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GRIN2DO15399 1336 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLIT3O75094 1523 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KIAA1217Q5T5P2 1943 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DOCK9Q9BZ29 2069 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RAD54L2Q9Y4B4 1467 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGLV4-69A0A075B6H9 119 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGKV2-28A0A075B6P5 120 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGKV2D-24A0A075B6R9 120 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGKV1D-8A0A087WSZ0 117 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 A0A0U1RQV5 110 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SMIM28A0A1B0GU29 152 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 NKX2-6A6NCS4 301 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLC9B1P1A6NJY1 282 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 VSTM2BA6NLU5 285 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GJE1A6NN92 205 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 C19orf81C9J6K1 198 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 E9PBE3 544 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GFYI3L273 518 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 NBR2O15453 112 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CFLARO15519 480 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF264O43296 627 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DUX1O43812 170 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DFNA5O60443 496 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 N4BP1O75113 896 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 ATP6V1G1O75348 118 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TRIM3O75382 744 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 CRCPO75575 148 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLITRK3O94933 977 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 LGI1O95970 557 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 F10P00742 488 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGKV2D-28P01615 120 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGLV2-23P01705 113 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGF1P05019 195 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ALPPP05187 535 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ANXA4P09525 319 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLC35G4P0C7Q5 338 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CHTF8P0CG12 524 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF286BP0CG31 522 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ALPPL2P10696 532 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TDGF1P13385 188 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CRISP2P16562 243 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 FUT1P19526 365 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CCNA2P20248 432 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 NPR2P20594 1047 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CYP2B6P20813 491 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GABRR1P24046 479 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 COL8A2P25067 703 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A5P35504 534 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GCKP35557 465 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CYLC1P35663 651 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 PTGDSP41222 190 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 BDKRB1P46663 353 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GNPDA1P46926 289 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TFPI2P48307 235 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KLK7P49862 253 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 EMDP50402 254 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CCR6P51684 374 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TDGF1P3P51864 188 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms