RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PRSS42Q7Z5A4 293 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 C7orf61Q8IZ16 206 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 ST7LQ8TDW4 575 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RNF128Q8TEB7 428 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TMEM43Q9BTV4 400 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 FBXL2Q9UKC9 423 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 CSNK1G3Q9Y6M4 447 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 HAPLN1P10915 354 aaPredicted RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 PRDX3P30048 256 aaKnown RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 GIPRP48546 466 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PER3P56645 1201 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 KIAA1024LP59773 190 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PDZK1IP1Q13113 114 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CAMK2DQ13557 499 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PODNL1Q6PEZ8 512 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PSRC1Q6PGN9 363 aaPredicted RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 TMEM107Q6UX40 140 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 NPAS4Q8IUM7 802 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 LSMEM1Q8N8F7 131 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 POC1BQ8TC44 478 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PCNPQ8WW12 178 aaKnown RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 HAS2Q92819 552 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 KLHL15Q96M94 604 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 OR5M11Q96RB7 305 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 SLC25A31Q9H0C2 315 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 RBM38Q9H0Z9 239 aaKnown RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 ENY2Q9NPA8 101 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ETV7Q9Y603 341 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 RNF215Q9Y6U7 377 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PPP1R3DO95685 299 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 GABRA3P34903 492 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 SLC1A3P43003 542 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CDKN1CP49918 316 aaPredicted RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 LTBQ06643 244 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 MAP4K2Q12851 820 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ACTBL2Q562R1 376 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CLLU1Q5K131 121 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ZBTB37Q5TC79 503 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 LEG1Q6P5S2 330 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 OR4E2Q8NGC2 313 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 TM9SF4Q92544 642 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 LMF1Q96S06 567 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 DOK1Q99704 481 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ALOXE3Q9BYJ1 711 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 SRA1Q9HD15 236 aaKnown RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 PRODH2Q9UF12 536 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CDK5RAP2Q96SN8 1893 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 OR6C6A6NF89 314 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PPP1R2P9O14990 202 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CSTAP01040 98 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 HRGP04196 525 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CTNNB1P35222 781 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 CAV3P56539 151 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 FIP1L1Q6UN15 594 aaKnown RBP8.4□□□□□ -1.07
VCL-206ENST00000623461 FUNDC1Q8IVP5 155 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 SLC35F3Q8IY50 421 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 OR4K13Q8NH42 304 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ASB13Q8WXK3 278 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 PELI2Q9HAT8 420 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 B4GALT6Q9UBX8 382 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 TRAPPC4Q9Y296 219 aa8.4□□□□□ -1.07
VCL-206ENST00000623461 ARAP2Q8WZ64 1704 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 KCNK2O95069 426 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 PMS2P2O95744 297 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 SYN1P17600 705 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 MASP1P48740 699 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 SLC26A5P58743 744 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 CSNK2A1P68400 391 aaPredicted RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 MEF2AQ02078 507 aaPredicted RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 NKPD1Q17RQ9 610 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ZNF704Q6ZNC4 412 aaPredicted RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 NLRC3Q7RTR2 1065 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 GPR155Q7Z3F1 870 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ANKLE1Q8NAG6 615 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 CSNK2A3Q8NEV1 391 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 HOXB13Q92826 284 aaPredicted RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 TGM7Q96PF1 710 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 M0R3H8 397 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 SLC16A8O95907 504 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 GASTP01350 101 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 CR2P20023 1033 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 GJA5P36382 358 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ERVK-21P61565 698 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 NANOGP1Q8N7R0 232 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 TAAR8Q969N4 342 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ZNF582Q96NG8 517 aaPredicted RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 CDCA4Q9BXL8 241 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 PDLIM7Q9NR12 457 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 A8MXE2 369 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 TNFRSF10BO14763 440 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ATG12O94817 140 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 ACP5P13686 325 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 MSR1P21757 451 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 SGSHP51688 502 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 CXADRP78310 365 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 TSPAN31Q12999 210 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 PLA2G7Q13093 441 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 CTU2Q2VPK5 515 aaKnown RBP8.39□□□□□ -1.07
VCL-206ENST00000623461 DEFB115Q30KQ5 88 aa8.39□□□□□ -1.07
VCL-206ENST00000623461 OR2G6Q5TZ20 316 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms