RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GTF2H4Q92759 462 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 RAB8BQ92930 207 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 ZBTB8AQ96BR9 441 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 ROPN1LQ96C74 230 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 NPAS1Q99742 590 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 SIKE1Q9BRV8 207 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 NPDC1Q9NQX5 325 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 MED17Q9NVC6 651 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 L3MBTL1Q9Y468 752 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 CLCA1A8K7I4 914 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 H0Y3Z8 333 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 HNRNPRO43390 633 aaKnown RBP14.56□□□□□ -0.08
TRIM28-213ENST00000598355 P2RX1P51575 399 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 CASP9P55211 416 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 PLAURQ03405 335 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 SKP2Q13309 424 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 COX20Q5RI15 118 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 PDZK1Q5T2W1 519 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ATAD3BQ5T9A4 648 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 BLOC1S3Q6QNY0 202 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 DNAJC14Q6Y2X3 702 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF621Q6ZSS3 439 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 GGNQ86UU5 652 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 METTL25Q8N6Q8 603 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 C9orf106Q8NAJ2 232 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 TOR1AIP2Q8NFQ8 470 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 OR10Q1Q8NGQ4 319 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 POC1BQ8TC44 478 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 PHOSPHO1Q8TCT1 267 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 XAGE5Q8WWM1 108 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 VPS33AQ96AX1 596 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ARSGQ96EG1 525 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ITCHQ96J02 903 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ZFP3Q96NJ6 502 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 TRIB1Q96RU8 372 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 PAIP1Q9H074 479 aaKnown RBP14.56□□□□□ -0.08
TRIM28-213ENST00000598355 SLC38A1Q9H2H9 487 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 CCDC134Q9H6E4 229 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 RMND5AQ9H871 391 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 MED4Q9NPJ6 270 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 VDAC3Q9Y277 283 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF337Q9Y3M9 751 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 WDR45Q9Y484 360 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 GMEB1Q9Y692 573 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 AP4B1Q9Y6B7 739 aa14.56□□□□□ -0.08
TRIM28-213ENST00000598355 UQCRHLA0A096LP55 91 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 NKX2-6A6NCS4 301 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 SERINC4A6NH21 518 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 FAM90A27PA6NNH2 459 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 H3BNH8 94 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 EIF4E2O60573 245 aaKnown RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 NTN1O95631 604 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 IL18BPO95998 194 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 GSNP06396 782 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 POU3F2P20265 443 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 RPS4Y1P22090 263 aaKnown RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 TCEA1P23193 301 aaKnown RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ELK4P28324 431 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ANXA11P50995 505 aaKnown RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 FGFBP1Q14512 234 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 SQLEQ14534 574 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 MAPK11Q15759 364 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 MAPK14Q16539 360 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 FBXL19-AS1Q494R0 122 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 GTDC1Q4AE62 458 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 SLC25A53Q5H9E4 307 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 LRIF1Q5T3J3 769 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 OLIG3Q7RTU3 272 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF619Q8N2I2 560 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ARFGAP2Q8N6H7 521 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 WNT2BQ93097 391 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 SH3YL1Q96HL8 342 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ADGRG7Q96K78 797 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 TRNT1Q96Q11 434 aaKnown RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 SPOCK3Q9BQ16 436 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 UCK2Q9BZX2 261 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF629Q9UEG4 869 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-213ENST00000598355 MKLN1Q9UL63 735 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 LIPT1Q9Y234 373 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 DSPPQ9NZW4 1301 aa14.55□□□□□ -0.08
TRIM28-213ENST00000598355 TRBV5-3A0A0A0MS03 114 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 SHISA8B8ZZ34 492 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF264O43296 627 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 H6PDO95479 791 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 KRT75O95678 551 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 IL2RAP01589 272 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 CHRM4P08173 479 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 UBL4AP11441 157 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 BMP2P12643 396 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 CAPN3P20807 821 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 ADH6P28332 368 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF41P51814 821 aaPredicted RBP14.54□□□□□ -0.08
TRIM28-213ENST00000598355 SUCLG1P53597 346 aaKnown RBP14.54□□□□□ -0.08
TRIM28-213ENST00000598355 DLX5P56178 289 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 CLDN20P56880 219 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 SRYQ05066 204 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 GPR68Q15743 365 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 CTU2Q2VPK5 515 aaKnown RBP14.54□□□□□ -0.08
TRIM28-213ENST00000598355 NDUFAF6Q330K2 333 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 LRRC74BQ6ZQY2 392 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms