RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CR1LQ2VPA4 569 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 GLE1Q53GS7 698 aaKnown RBP8.94□□□□□ -0.98
TRIM28-210ENST00000597618 ACSM2BQ68CK6 577 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 MISPQ8IVT2 679 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.94□□□□□ -0.98
TRIM28-210ENST00000597618 GATSQ8NAP1 163 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 SGMS2Q8NHU3 365 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 POC1BQ8TC44 478 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 FBF1Q8TES7 1133 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 C16orf78Q8WTQ4 265 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 C1orf159Q96HA4 380 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 PRR14Q9BWN1 585 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 BCO1Q9HAY6 547 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 DMGDHQ9UI17 866 aaKnown RBP8.94□□□□□ -0.98
TRIM28-210ENST00000597618 GRID1Q9ULK0 1009 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 PMF1-BGLAPU3KQ54 211 aa8.94□□□□□ -0.98
TRIM28-210ENST00000597618 YLPM1P49750 1951 aaKnown RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 GXYLT2A0PJZ3 443 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 CCDC188H7C350 402 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 KIF2AO00139 706 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 MANBAO00462 879 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 RGS14O43566 566 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 IGKV1D-16P01601 117 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 RPS17P08708 135 aaKnown RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 IFI6P09912 130 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 HPGDP15428 266 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 IGHV1-2P23083 117 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 CD40P25942 277 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 SHC1P29353 583 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 TYK2P29597 1187 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 TIA1P31483 386 aaKnown RBP eCLIP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 SRP14P37108 136 aaKnown RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 SERPINB8P50452 374 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF83P51522 516 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 RAE1P78406 368 aaKnown RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 SPOCK1Q08629 439 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 FOXF1Q12946 379 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 VPS26BQ4G0F5 336 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 ARL13AQ5H913 290 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 GALNT18Q6P9A2 607 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 B3GLCTQ6Y288 498 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 GAS2L3Q86XJ1 694 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 MMGT1Q8N4V1 131 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 B4GALNT2Q8NHY0 566 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 FAM110BQ8TC76 370 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 GPR151Q8TDV0 419 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF483Q8TF39 744 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 ZFAND2BQ8WV99 257 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 C3orf49Q96BT1 292 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 ELP4Q96EB1 424 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 SH3YL1Q96HL8 342 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 PSD2Q9BQI7 771 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 INPP5KQ9BT40 448 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 VPS11Q9H270 941 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 CXorf36Q9H7Y0 433 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 MYOZ1Q9NP98 299 aaPredicted RBP8.93□□□□□ -0.98
TRIM28-210ENST00000597618 MYNNQ9NPC7 610 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 PRSS50Q9UI38 385 aa8.93□□□□□ -0.98
TRIM28-210ENST00000597618 PKD1L1Q8TDX9 2849 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 PCNX3Q9H6A9 2034 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 IGHV4-61A0A0C4DH41 118 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 HMX2A2RU54 273 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 PPP6CO00743 305 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 LY6HO94772 140 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 LINGO3P0C6S8 592 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 ENPP1P22413 925 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 PRIM2P49643 509 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF763Q0D2J5 394 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 RPS27LQ71UM5 84 aaKnown RBP8.92□□□□□ -0.98
TRIM28-210ENST00000597618 OR4C3Q8NH37 302 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 ZFP90Q8TF47 636 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 PIK3R3Q92569 461 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 AMDHD1Q96NU7 426 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 TRMOQ9BU70 441 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 EBPLQ9BY08 206 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 ACPTQ9BZG2 426 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 COQ10BQ9H8M1 238 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 EQTNQ9NQ60 294 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 MIEF1Q9NQG6 463 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 TAS2R7Q9NYW3 318 aa8.92□□□□□ -0.98
TRIM28-210ENST00000597618 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.92□□□□□ -0.98
TRIM28-210ENST00000597618 IGHV3-15A0A0B4J1V0 119 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 LOC390937A0A1W2PQ73 354 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 A0A1W2PQD3 144 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF724A8MTY0 619 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 SCDO00767 359 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF195O14628 629 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 SMAD9O15198 467 aaKnown RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ULK1O75385 1050 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 RAD51DO75771 328 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 OR4F21O95013 312 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 NKX2-2O95096 273 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ANXA4P09525 319 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CHN1P15882 459 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF23P17027 643 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 EGR1P18146 543 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 TSPAN8P19075 237 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 SLC7A1P30825 629 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 LCN1P31025 176 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 APOBEC3AP31941 199 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms