RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FLVCR1Q9Y5Y0 555 aa2.82□□□□□ -1.96
SMCHD1-209ENST00000583441 TDRD15B5MCY1 1934 aaKnown RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 TMEM110-MUSTN1A8MSY1 372 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GPR89AB7ZAQ6 455 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 MSH4O15457 936 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 OR1F1O43749 312 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 NUDT21O43809 227 aaKnown RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 B3GAT3O94766 335 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 PGK1P00558 417 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 THY1P04216 161 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 STSP08842 583 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GPR89BP0CG08 455 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 SLC35E2P0CK97 266 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 SERPINA2P20848 420 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ZP3P21754 424 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GDF1P27539 372 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 PRKAR2BP31323 418 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 SPIBQ01892 262 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 OC90Q02509 493 aaPredicted RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 RAB40BQ12829 278 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 NDUFA9Q16795 377 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GSG1Q2KHT4 349 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 PAN3Q58A45 887 aaKnown RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 PAGE2BQ5JRK9 111 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 TTC23Q5W5X9 447 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 OR5M10Q6IEU7 315 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 UFSP1Q6NVU6 142 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 FAM71F2Q6NXP2 309 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 VITQ6UXI7 678 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 Q6ZR54 194 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 CYS1Q717R9 158 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 TMEM110Q86TL2 294 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ZNF683Q8IZ20 524 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GPR137CQ8N3F9 429 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ZNF525Q8N782 197 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 IPMKQ8NFU5 416 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 STXBP6Q8NFX7 210 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 TYMSOSQ8TAI1 123 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 CNIH3Q8TBE1 160 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 GTSF1Q8WW33 167 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 CTNNBL1Q8WYA6 563 aaPredicted RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 SH3YL1Q96HL8 342 aaPredicted RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 OR5B2Q96R09 309 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 RIT2Q99578 217 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ERP44Q9BS26 406 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 TUBGCP2Q9BSJ2 902 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 CRACR2AQ9BSW2 395 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 MIEF1Q9NQG6 463 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 NANSQ9NR45 359 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 NUDT15Q9NV35 164 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 EXTL2Q9UBQ6 330 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 RPH3ALQ9UNE2 315 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 MRPS33Q9Y291 106 aaKnown RBP2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 MAB21L2Q9Y586 359 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ALG6Q9Y672 507 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 ATP10DQ9P241 1426 aa2.81□□□□□ -1.96
SMCHD1-209ENST00000583441 C15orf38-AP3S2A0A0A6YYH1 394 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 DHRS7CA6NNS2 312 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 N4BP1O75113 896 aaKnown RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 TM7SF2O76062 418 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 NOL4O94818 638 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 CPN1P15169 458 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 PTBP1P26599 531 aaKnown RBP eCLIP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 CD80P33681 288 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 MDH2P40926 338 aaKnown RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 BDKRB1P46663 353 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 RGS4P49798 205 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 MEOX2P50222 304 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 CNTN2Q02246 1040 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 DPYSL3Q14195 570 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 LAGE3Q14657 143 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 GANABQ14697 944 aaKnown RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 SBK1Q52WX2 424 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 SPATA46Q5T0L3 261 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 RSBN1Q5VWQ0 802 aaPredicted RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 TMEM225Q6GV28 225 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 CGB2Q6NT52 195 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 PAMR1Q6UXH9 720 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 C16orf62Q7Z3J2 963 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 MOB3BQ86TA1 216 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 ACOT1Q86TX2 421 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 VASH2Q86V25 355 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 APOBEC3FQ8IUX4 373 aaKnown RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 STEAP2Q8NFT2 490 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 M1APQ8TC57 530 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 FAM3CQ92520 227 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 TTC25Q96NG3 672 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 KIR2DL4Q99706 377 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 SLC6A7Q99884 636 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 CITED1Q99966 193 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 C19orf24Q9BVV8 132 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 TSSK1BQ9BXA7 367 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 RHOJQ9H4E5 214 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 ZNF385DQ9H6B1 395 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 ELOVL3Q9HB03 270 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 WRAP73Q9P2S5 460 aaPredicted RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 SPRR3Q9UBC9 169 aa2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 APOBEC3BQ9UH17 382 aaKnown RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 ZNF107Q9UII5 783 aaPredicted RBP2.8□□□□□ -1.96
SMCHD1-209ENST00000583441 PDE10AQ9Y233 779 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms