RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DOCK10Q96BY6 2186 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 TRBV11-1A0A0K0K1C0 115 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 A0A1W2PNU3 283 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 OIP5O43482 229 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PIP5K1CO60331 668 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ICOSLGO75144 302 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 DLGAP3O95886 979 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 CSTAP01040 98 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 UMODP07911 640 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 IGFBP1P08833 259 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 JMJD7P0C870 316 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PTNP21246 168 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 MMP11P24347 488 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 RYKP34925 604 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 KRT20P35900 424 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 GGT2P36268 569 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ACAA2P42765 397 aaKnown RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 RPS6KA3P51812 740 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 CRISP1P54107 249 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 CDH15P55291 814 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 NUP107P57740 925 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 SLC26A5P58743 744 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 TARDBPQ13148 414 aaKnown RBP eCLIP9.67□□□□□ -0.86
SS18-217ENST00000580958 APOFQ13790 326 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PCOLCEQ15113 449 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 TRIP6Q15654 476 aaKnown RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 KCTD21Q4G0X4 260 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 KLHL26Q53HC5 615 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 HES3Q5TGS1 186 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 STPG1Q5TH74 334 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 C6orf15Q6UXA7 325 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 HSDL2Q6YN16 418 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ZNF730Q6ZMV8 503 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ZNF517Q6ZMY9 492 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 C16orf47Q6ZP98 133 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 ZNF550Q7Z398 422 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ZER1Q7Z7L7 766 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 CCDC71Q8IV32 467 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 CMIPQ8IY22 773 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 APCDD1LQ8NCL9 501 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PIGXQ8TBF5 258 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 GNPDA2Q8TDQ7 276 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ACOT11Q8WXI4 607 aaPredicted RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 HDAC2Q92769 488 aaKnown RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 HRASLS5Q96KN8 279 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PRRX2Q99811 253 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PRSS27Q9BQR3 290 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ZPBPQ9BS86 351 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 DDA1Q9BW61 102 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 TMEM27Q9HBJ8 222 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 UBQLN4Q9NRR5 601 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 REV1Q9UBZ9 1251 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 AASSQ9UDR5 926 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 ENOPH1Q9UHY7 261 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 PPIEQ9UNP9 301 aaKnown RBP9.67□□□□□ -0.86
SS18-217ENST00000580958 SLC35A3Q9Y2D2 325 aa9.67□□□□□ -0.86
SS18-217ENST00000580958 MUC6Q6W4X9 2439 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 LOC102723996A0A087X1L8 192 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 A0A1B0GWA3 101 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 DPPA5A6NC42 116 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 A6NHS1 94 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 SCDO00767 359 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 PLD2O14939 933 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 ADAM11O75078 769 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 SOX14O95416 240 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 TP53P04637 393 aaPredicted RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 OSMP13725 252 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 ATP6V1B1P15313 513 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 TBXA2RP21731 343 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 CHMP24386 653 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 POU1F1P28069 291 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 ABCD3P28288 659 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 LCN1P31025 176 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 IFNGR2P38484 337 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 FOLR3P41439 243 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 ESRRGP62508 458 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 CDK5R2Q13319 367 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 MAD2L1BPQ15013 274 aaPredicted RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 C6orf141Q5SZD1 244 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 FNDC7Q5VTL7 733 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 LAIR2Q6ISS4 152 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 C1orf94Q6P1W5 598 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 APOOLQ6UXV4 268 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 WDR88Q6ZMY6 472 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 MBOAT2Q6ZWT7 520 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 RRM2BQ7LG56 351 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 TIPARPQ7Z3E1 657 aaKnown RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 APLFQ8IW19 511 aaPredicted RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 NRMQ8IXM6 262 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 ZNF527Q8NB42 609 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 C17orf47Q8NEP4 570 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 TSPAN14Q8NG11 270 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 NUBPLQ8TB37 319 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 CNIH3Q8TBE1 160 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 RNF217Q8TC41 542 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 PHOSPHO1Q8TCT1 267 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 GRHL3Q8TE85 626 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 THAP3Q8WTV1 239 aaPredicted RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 CT55Q8WUE5 264 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 FBLIM1Q8WUP2 373 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms