RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NSUN5P2Q63ZY6 315 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 LACC1Q8IV20 430 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 ZNF619Q8N2I2 560 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 ANKFN1Q8N957 763 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 ASB5Q8WWX0 329 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 ZG16BQ96DA0 208 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 AURKBQ96GD4 344 aaPredicted RBP17.47■□□□□ 0.39
SS18-208ENST00000577751 ZNF317Q96PQ6 595 aaPredicted RBP17.47■□□□□ 0.39
SS18-208ENST00000577751 TRNT1Q96Q11 434 aaKnown RBP17.47■□□□□ 0.39
SS18-208ENST00000577751 UCN2Q96RP3 112 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 SLC38A1Q9H2H9 487 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 CALHM2Q9HA72 323 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 SLC25A37Q9NYZ2 338 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 SLAMF8Q9P0V8 285 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 Q9UFV3 132 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 VDAC3Q9Y277 283 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 CARD8Q9Y2G2 431 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 GMEB1Q9Y692 573 aa17.47■□□□□ 0.39
SS18-208ENST00000577751 FAM47E-STBD1D6RA91 191 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 ZNF264O43296 627 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 EIF4E2O60573 245 aaKnown RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 TNFRSF21O75509 655 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 H6PDO95479 791 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 LINGO3P0C6S8 592 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 ETFAP13804 333 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 ZNF17P17021 662 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 PSMA4P25789 261 aaKnown RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 CEACAM8P31997 349 aaPredicted RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 RNF144AP50876 292 aaPredicted RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 ARFIP2P53365 341 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 SUMO3P55854 103 aaPredicted RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 PLPPR5Q32ZL2 321 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 GPAT3Q53EU6 434 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 HIST2H2BCQ6DN03 193 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 LRRC74BQ6ZQY2 392 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 CCDC71Q8IV32 467 aaPredicted RBP17.46■□□□□ 0.39
SS18-208ENST00000577751 ZNF614Q8N883 585 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 OR5M1Q8NGP8 315 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 LILRB4Q8NHJ6 448 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 ZBTB8AQ96BR9 441 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 NPAS1Q99742 590 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 TUBA1CQ9BQE3 449 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 MED17Q9NVC6 651 aa17.46■□□□□ 0.39
SS18-208ENST00000577751 HEATR5AQ86XA9 2040 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 TRBV5-3A0A0A0MS03 114 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 MBD3L4A6NDZ8 208 aaPredicted RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 MBD3L3A6NE82 208 aaPredicted RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 MBD3L5A6NJ08 208 aaPredicted RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 PRSS44E7EML9 344 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 GTPBP1O00178 669 aaKnown RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 CLIC1O00299 241 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 DNAJA2O60884 412 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 CHRM4P08173 479 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 TFPTP0C1Z6 253 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 UBL4AP11441 157 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 COL8A1P27658 744 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 CLDN15P56746 228 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 SRYQ05066 204 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 FGFBP1Q14512 234 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 NDUFAF6Q330K2 333 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 MSRB3Q8IXL7 192 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 GTPBP8Q8N3Z3 284 aaPredicted RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 OR10Q1Q8NGQ4 319 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 MBD3L2Q8NHZ7 208 aaPredicted RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 CA5BP1Q8WTZ4 195 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 TSPEARQ8WU66 669 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 PMM1Q92871 262 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 ARSGQ96EG1 525 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 TRIB1Q96RU8 372 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 RUBCNLQ9H714 662 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 THUMPD1Q9NXG2 353 aaKnown RBP17.45■□□□□ 0.38
SS18-208ENST00000577751 L3MBTL1Q9Y468 752 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 CACNA1CQ13936 2221 aa17.45■□□□□ 0.38
SS18-208ENST00000577751 SHISA8B8ZZ34 492 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 H0Y3Z8 333 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 BMP2P12643 396 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 POU3F2P20265 443 aaPredicted RBP17.44■□□□□ 0.38
SS18-208ENST00000577751 HTR1EP28566 365 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 GRNP28799 593 aaKnown RBP17.44■□□□□ 0.38
SS18-208ENST00000577751 CRATP43155 626 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 ZNF41P51814 821 aaPredicted RBP17.44■□□□□ 0.38
SS18-208ENST00000577751 SUCLG1P53597 346 aaKnown RBP17.44■□□□□ 0.38
SS18-208ENST00000577751 DSTNP60981 165 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 RGNQ15493 299 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 TOR1AIP2Q8NFQ8 470 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 TNIP2Q8NFZ5 429 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 POC1BQ8TC44 478 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 GPR119Q8TDV5 335 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 LAT2Q9GZY6 243 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 MTHFD2LQ9H903 347 aaPredicted RBP17.44■□□□□ 0.38
SS18-208ENST00000577751 VAPAQ9P0L0 249 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 KLHL14Q9P2G3 628 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 P2RX2Q9UBL9 471 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 AP4B1Q9Y6B7 739 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 DOCK7Q96N67 2140 aa17.44■□□□□ 0.38
SS18-208ENST00000577751 SETXQ7Z333 2677 aaKnown RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 AGAP5A6NIR3 686 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 HSPB2A8KAH6 182 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 H3BML4 177 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 CSTAP01040 98 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms