RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MRPL2Q5T653 305 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 RNF220Q5VTB9 566 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 DHRS4L2Q6PKH6 230 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 C16orf89Q6UX73 402 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 IFNEQ86WN2 208 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 LACC1Q8IV20 430 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 FAM86B1Q8N7N1 296 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 TMEM178AQ8NBL3 297 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 OR52P1PQ8NH57 321 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 SNRNP40Q96DI7 357 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 C5orf34Q96MH7 638 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 GNRHR2Q96P88 292 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 SLX1AQ9BQ83 275 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 BTBD10Q9BSF8 475 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 DOHHQ9BU89 302 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 HOXD1Q9GZZ0 328 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 LRMDAQ9H2I8 198 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 METTL7AQ9H8H3 244 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ZFP64Q9NPA5 681 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 KLRF1Q9NZS2 232 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 MRTO4Q9UKD2 239 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 ZNF443Q9Y2A4 671 aaPredicted RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 LIPGQ9Y5X9 500 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 GCN1Q92616 2671 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 M0QX08 132 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 AP3D1O14617 1153 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 GSC2O15499 205 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 SUV39H1O43463 412 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 FRS3O43559 492 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 PDE5AO76074 875 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 IGHG3P01860 377 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 HPNP05981 417 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 DBIP07108 87 aaKnown RBP8.44□□□□□ -1.06
VPS35-211ENST00000569950 ATP6V1B2P21281 511 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ATP6V1C1P21283 382 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 PRKAR1BP31321 381 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 KDELR2P33947 212 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 MAGEA5P43359 124 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 KCNJ5P48544 419 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 KCNJ2P63252 427 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 KCNJ10P78508 379 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 NFATC3Q12968 1075 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 INAQ16352 499 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ERICH5Q6P6B1 374 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ARSKQ6UWY0 536 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 TRILQ7L0X0 811 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 PLCZ1Q86YW0 608 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 GRAMD2AQ8IUY3 354 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ZNF843Q8N446 348 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 CISD2Q8N5K1 135 aaKnown RBP8.44□□□□□ -1.06
VPS35-211ENST00000569950 OR10Q1Q8NGQ4 319 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 POC1BQ8TC44 478 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 GPR119Q8TDV5 335 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 WDR60Q8WVS4 1066 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ZNF597Q96LX8 424 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ARHGDIGQ99819 225 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 TBL1XR1Q9BZK7 514 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 OR2B2Q9GZK3 357 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 PCDHAC1Q9H158 963 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 DSN1Q9H410 356 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ASF1BQ9NVP2 202 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 ADA2Q9NZK5 511 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 CALML5Q9NZT1 146 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 MED11Q9P086 117 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 EGFL7Q9UHF1 273 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 PRPF19Q9UMS4 504 aaKnown RBP8.44□□□□□ -1.06
VPS35-211ENST00000569950 CARD8Q9Y2G2 431 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 AP3M1Q9Y2T2 418 aa8.44□□□□□ -1.06
VPS35-211ENST00000569950 LRRK2Q5S007 2527 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ARHGAP21Q5T5U3 1957 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 TCRBV5S2A0A599 114 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 FAM166BA8MTA8 275 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 KLRC4-KLRK1H3BQV0 150 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 CXCR6O00574 342 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ARPC2O15144 300 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ZNHIT1O43257 154 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ZNF264O43296 627 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 NDUFB5O43674 189 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 HS6ST1O60243 411 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 LYPD3O95274 346 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 LGI1O95970 557 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 THY1P04216 161 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SEMG1P04279 462 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 LINGO3P0C6S8 592 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 UBL4AP11441 157 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 TNFRSF1BP20333 461 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 HTR2AP28223 471 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 MLLT10P55197 1068 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 PPIAP62937 165 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 RPP38P78345 283 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 C17orf67Q0P5P2 114 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 GNA13Q14344 377 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 ESPL1Q14674 2120 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 NRF1Q16656 503 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SPATS1Q496A3 300 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 SAMD4BQ5PRF9 694 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 PATL1Q86TB9 770 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 MED12LQ86YW9 2145 aa8.43□□□□□ -1.06
VPS35-211ENST00000569950 RBM45Q8IUH3 476 aaKnown RBP8.43□□□□□ -1.06
VPS35-211ENST00000569950 SPPL2CQ8IUH8 684 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms