RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NUDT17P0C025 328 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 PPP3CBP16298 524 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 EIF1P41567 113 aaKnown RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 CCT3P49368 545 aaKnown RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 PTGR1Q14914 329 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ATP6AP1LQ52LC2 224 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 KLHL26Q53HC5 615 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 Q5PR19 223 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 C6orf136Q5SQH8 315 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 PDSS1Q5T2R2 415 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 GTF2IRD2BQ6EKJ0 949 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 CDC73Q6P1J9 531 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 BEND4Q6ZU67 534 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 GTF2IRD2Q86UP8 949 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 LILRA2Q8N149 483 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 NATD1Q8N6N6 113 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 PHOSPHO1Q8TCT1 267 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 TCP10LQ8TDR4 215 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 OSTF1Q92882 214 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 CCL19Q99731 98 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ACTRT3Q9BYD9 372 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ANKZF1Q9H8Y5 726 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 DSCAMO60469 2012 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ARID1AO14497 2285 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 KLF4O43474 513 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 SPAG7O75391 227 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 LYPLA1O75608 230 aaPredicted RBP14.37□□□□□ -0.11
CLN3-229ENST00000567963 SOX30O94993 753 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ATP6V1C1P21283 382 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ARRB2P32121 409 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 SERPINB5P36952 375 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 CARD18P57730 90 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ZNF117Q03924 483 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 LTBQ06643 244 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 CBLN3Q6UW01 205 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 PRSS57Q6UWY2 283 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 C20orf204Q6ZNR8 217 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 Q71RC1 249 aaPredicted RBP14.37□□□□□ -0.11
CLN3-229ENST00000567963 ZNF527Q8NB42 609 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 NUDT8Q8WV74 236 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 OR5P2Q8WZ92 322 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 COQ8BQ96D53 544 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 KLHL15Q96M94 604 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 C1orf50Q9BV19 199 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 HOXD1Q9GZZ0 328 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 CXorf36Q9H7Y0 433 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ZNF395Q9H8N7 513 aaPredicted RBP14.37□□□□□ -0.11
CLN3-229ENST00000567963 ATAD3AQ9NVI7 634 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 GPATCH2Q9NW75 528 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 LGALS13Q9UHV8 139 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 ZDHHC2Q9UIJ5 367 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 KCNE3Q9Y6H6 103 aa14.37□□□□□ -0.11
CLN3-229ENST00000567963 EFNA2O43921 213 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 NID1P14543 1247 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 ADH6P28332 368 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 SFTPDP35247 375 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 P2RX1P51575 399 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 TP53BP2Q13625 1128 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 LSM12Q3MHD2 195 aaKnown RBP14.36□□□□□ -0.11
CLN3-229ENST00000567963 BEX5Q5H9J7 111 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 DCST2Q5T1A1 773 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 IL23RQ5VWK5 629 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 STK32CQ86UX6 486 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 KRTCAP2Q8N6L1 136 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 FNDC5Q8NAU1 212 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 OR56A1Q8NGH5 318 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 ADAMTS15Q8TE58 950 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 PRPF18Q99633 342 aaKnown RBP14.36□□□□□ -0.11
CLN3-229ENST00000567963 FANCFQ9NPI8 374 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 ICAM5Q9UMF0 924 aa14.36□□□□□ -0.11
CLN3-229ENST00000567963 FAF1Q9UNN5 650 aaPredicted RBP14.36□□□□□ -0.11
CLN3-229ENST00000567963 NPIPA5A0A0B4J1W7 369 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.35□□□□□ -0.11
CLN3-229ENST00000567963 NPIPA7E9PJI5 369 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 NUDT14O95848 222 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 C6orf47O95873 294 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 TUBBP07437 444 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 NPIPA8P0DM63 369 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 PRPS1L1P21108 318 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 ELK4P28324 431 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 SHC1P29353 583 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 AGTR1P30556 359 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 FOXF1Q12946 379 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.35□□□□□ -0.11
CLN3-229ENST00000567963 CLEC9AQ6UXN8 241 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 RIMKLAQ8IXN7 391 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 FBXO27Q8NI29 283 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 PPP1R14CQ8TAE6 165 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 RNF128Q8TEB7 428 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 ROBO4Q8WZ75 1007 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 CPNE4Q96A23 557 aaPredicted RBP14.35□□□□□ -0.11
CLN3-229ENST00000567963 ROPN1BQ9BZX4 212 aaPredicted RBP14.35□□□□□ -0.11
CLN3-229ENST00000567963 OR10A4Q9H209 315 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 C12orf49Q9H741 205 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 ROPN1Q9HAT0 212 aaPredicted RBP14.35□□□□□ -0.11
CLN3-229ENST00000567963 TIGARQ9NQ88 270 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 CARD8Q9Y2G2 431 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 GPR52Q9Y2T5 361 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 ACTL7BQ9Y614 415 aa14.35□□□□□ -0.11
CLN3-229ENST00000567963 GPC6Q9Y625 555 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms