RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 FAM71CQ8NEG0 241 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 MAGEE2Q8TD90 523 aaPredicted RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 BRIX1Q8TDN6 353 aaKnown RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 THOC3Q96J01 351 aaKnown RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 SCNM1Q9BWG6 230 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 RTN4RQ9BZR6 473 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 GABARAPL1Q9H0R8 117 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 PRDM4Q9UKN5 801 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 PCNX3Q9H6A9 2034 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 MED13Q9UHV7 2174 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 GTPBP1O00178 669 aaKnown RBP28.02■■■□□ 2.08
CTCF-203ENST00000566078 PRKACGP22612 351 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 LIMS1P48059 325 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 ST13P50502 369 aaKnown RBP28.02■■■□□ 2.08
CTCF-203ENST00000566078 SSR4P51571 173 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 SMIM11AP58511 58 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 DAG1Q14118 895 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 NTRK2Q16620 822 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 ADAMTS16Q8TE57 1224 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 GRHL3Q8TE85 626 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 ASB15Q8WXK1 588 aa28.02■■■□□ 2.08
CTCF-203ENST00000566078 ZNF264O43296 627 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 OIP5O43482 229 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 NDUFB5O43674 189 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 FMO6PO60774 539 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 OR6B1O95007 311 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 ELAVL4P26378 380 aaKnown RBP28.01■■■□□ 2.07
CTCF-203ENST00000566078 IFNA8P32881 189 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 SKP2Q13309 424 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 GK3PQ14409 553 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 OPN5Q6U736 354 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 TMCO5AQ8N6Q1 288 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 OR10G3Q8NGC4 313 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 DNAJC9Q8WXX5 260 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 TTC9Q92623 222 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 ALPK1Q96QP1 1244 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 ZNF559Q9BR84 538 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 POLR2J2Q9GZM3 115 aaKnown RBP28.01■■■□□ 2.07
CTCF-203ENST00000566078 POLR2J3Q9H1A7 115 aaKnown RBP28.01■■■□□ 2.07
CTCF-203ENST00000566078 SMURF2Q9HAU4 748 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 CARD8Q9Y2G2 431 aa28.01■■■□□ 2.07
CTCF-203ENST00000566078 TRBV4-1A0A0J9YWV2 114 aa28■■■□□ 2.07
CTCF-203ENST00000566078 ADAM11O75078 769 aa28■■■□□ 2.07
CTCF-203ENST00000566078 OR5F1O95221 314 aa28■■■□□ 2.07
CTCF-203ENST00000566078 ACAA2P42765 397 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 ALDH3A2P51648 485 aa28■■■□□ 2.07
CTCF-203ENST00000566078 HMGA2P52926 109 aa28■■■□□ 2.07
CTCF-203ENST00000566078 H3F3CQ6NXT2 135 aa28■■■□□ 2.07
CTCF-203ENST00000566078 ZNF440Q8IYI8 595 aa28■■■□□ 2.07
CTCF-203ENST00000566078 NAF1Q96HR8 494 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 FER1L6-AS2Q96M78 137 aa28■■■□□ 2.07
CTCF-203ENST00000566078 MAN2C1Q9NTJ4 1040 aa28■■■□□ 2.07
CTCF-203ENST00000566078 ANGPTL1O95841 491 aa28■■■□□ 2.07
CTCF-203ENST00000566078 CLK3P49761 638 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 OR1Q1Q15612 314 aa28■■■□□ 2.07
CTCF-203ENST00000566078 ZNF791Q3KP31 576 aaPredicted RBP28■■■□□ 2.07
CTCF-203ENST00000566078 ANKRD34AQ69YU3 496 aa28■■■□□ 2.07
CTCF-203ENST00000566078 JMJD6Q6NYC1 403 aaPredicted RBP28■■■□□ 2.07
CTCF-203ENST00000566078 GIPC3Q8TF64 312 aa28■■■□□ 2.07
CTCF-203ENST00000566078 SLC41A3Q96GZ6 507 aa28■■■□□ 2.07
CTCF-203ENST00000566078 RBM4BQ9BQ04 359 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 RBM4Q9BWF3 364 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 ATP13A2Q9NQ11 1180 aa28■■■□□ 2.07
CTCF-203ENST00000566078 EXOSC3Q9NQT5 275 aaKnown RBP28■■■□□ 2.07
CTCF-203ENST00000566078 TMCC3Q9ULS5 477 aa28■■■□□ 2.07
CTCF-203ENST00000566078 A0A1W2PRQ8 180 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 CCR4P51679 360 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 PPP2R2BQ00005 443 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 ST3GAL3Q11203 375 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 EPS8Q12929 822 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 AIMP2Q13155 320 aaKnown RBP27.99■■■□□ 2.07
CTCF-203ENST00000566078 DGCR6Q14129 220 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 MICAQ29983 383 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 B3GNTL1Q67FW5 361 aaPredicted RBP27.99■■■□□ 2.07
CTCF-203ENST00000566078 IL20RBQ6UXL0 311 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 OR10G2Q8NGC3 310 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 SH3YL1Q96HL8 342 aaPredicted RBP27.99■■■□□ 2.07
CTCF-203ENST00000566078 OSBPL10Q9BXB5 764 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 KIF17Q9P2E2 1029 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 WASF3Q9UPY6 502 aa27.99■■■□□ 2.07
CTCF-203ENST00000566078 CCNB2O95067 398 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 HPRP00739 348 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 ALPLP05186 524 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 ENDOUP21128 410 aaKnown RBP27.98■■■□□ 2.07
CTCF-203ENST00000566078 RYKP34925 604 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 ZNF117Q03924 483 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 DCST1Q5T197 706 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 CBLN3Q6UW01 205 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 GDF7Q7Z4P5 450 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 TMEM156Q8N614 296 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 ZNF597Q96LX8 424 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 LAT2Q9GZY6 243 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 USE1Q9NZ43 259 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 KLRF1Q9NZS2 232 aa27.98■■■□□ 2.07
CTCF-203ENST00000566078 TRAPPC13A5PLN9 417 aa27.97■■■□□ 2.07
CTCF-203ENST00000566078 C17orf51A8MQB3 221 aa27.97■■■□□ 2.07
CTCF-203ENST00000566078 H0YJX3 145 aa27.97■■■□□ 2.07
CTCF-203ENST00000566078 PRKAR1AP10644 381 aa27.97■■■□□ 2.07
CTCF-203ENST00000566078 ITGA3P26006 1051 aa27.97■■■□□ 2.07
CTCF-203ENST00000566078 TRAM2Q15035 370 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms