RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CLIP4Q8N3C7 705 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 AMER2Q8N7J2 671 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 PIK3C3Q8NEB9 887 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 PAQR8Q8TEZ7 354 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 RNF138Q8WVD3 245 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 MCHR1Q99705 422 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 PKP2Q99959 881 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 FNDC11Q9BVV2 318 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 TRIM2Q9C040 744 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 AMBRA1Q9C0C7 1298 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 LAT2Q9GZY6 243 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 TMEM27Q9HBJ8 222 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 CPNE5Q9HCH3 593 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 SACM1LQ9NTJ5 587 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 RPS6KB2Q9UBS0 482 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 RIMS3Q9UJD0 308 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 PRDM4Q9UKN5 801 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 SAMHD1Q9Y3Z3 626 aaKnown RBP11.74□□□□□ -0.53
CLK3-214ENST00000564096 CHCHD2Q9Y6H1 151 aaPredicted RBP11.74□□□□□ -0.53
CLK3-214ENST00000564096 PCSK5Q92824 1860 aa11.74□□□□□ -0.53
CLK3-214ENST00000564096 TMEM8BA6NDV4 472 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 A6NL46 340 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 FRS3O43559 492 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 SNX4O95219 450 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 H1F0P07305 194 aaKnown RBP11.73□□□□□ -0.53
CLK3-214ENST00000564096 ZNF23P17027 643 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 PGCP20142 388 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 MSX1P28360 303 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 RRM2P31350 389 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 MASP1P48740 699 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 ARG2P78540 354 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 ZNF117Q03924 483 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 TLE3Q04726 772 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 EPS8Q12929 822 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 COLEC12Q5KU26 742 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 SLC22A10Q63ZE4 541 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 UNQ6494/PRO21346Q6UXR6 183 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 LINC00696Q6ZRV3 163 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 COMTD1Q86VU5 262 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 LACC1Q8IV20 430 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 SVOPLQ8N434 492 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 ICA1LQ8NDH6 482 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 B4GALNT2Q8NHY0 566 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 PHF10Q8WUB8 498 aaKnown RBP11.73□□□□□ -0.53
CLK3-214ENST00000564096 CNOT9Q92600 299 aaKnown RBP11.73□□□□□ -0.53
CLK3-214ENST00000564096 EME1Q96AY2 570 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 EPYCQ99645 322 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 ANKRD19PQ9H560 264 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 KRCC1Q9NPI7 259 aaPredicted RBP11.73□□□□□ -0.53
CLK3-214ENST00000564096 C8orf4Q9NR00 106 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 LRFN1Q9P244 771 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 ACAD8Q9UKU7 415 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 CARD8Q9Y2G2 431 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 CHST2Q9Y4C5 530 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 TESMINQ9Y4I5 508 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 KCNMB2Q9Y691 235 aa11.73□□□□□ -0.53
CLK3-214ENST00000564096 CCDC88CQ9P219 2028 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 TRAPPC13A5PLN9 417 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ANKRD33BA6NCL7 494 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 OR5H15A6NDH6 313 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 CPSF4LA6NMK7 179 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 FAAHO00519 579 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 SLC25A12O75746 678 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 GADD45GO95257 159 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 NUDT14O95848 222 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 LINGO3P0C6S8 592 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 GKN3PP0CG01 181 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 THRBP10828 461 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 FPR1P21462 350 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ELAVL4P26378 380 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 ITPKBP27987 946 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 DNAJA1P31689 397 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 CASP3P42574 277 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 P2RX1P51575 399 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 CCL11P51671 97 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZNF136P52737 540 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 CDH12P55289 794 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ST3GAL3Q11203 375 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 RAPSNQ13702 412 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 TUBA3CQ13748 450 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 GANABQ14697 944 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 OR1C1Q15619 314 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 NPTX1Q15818 432 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 FGD3Q5JSP0 725 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ENTPD8Q5MY95 495 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 SWT1Q5T5J6 900 aaKnown RBP11.72□□□□□ -0.53
CLK3-214ENST00000564096 PRAMEF20Q5VT98 475 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 DESI1Q6ICB0 168 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 TUBA3EQ6PEY2 450 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZNF613Q6PF04 617 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 APOOLQ6UXV4 268 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZNF605Q86T29 641 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 PACS2Q86VP3 889 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 HIPK1Q86Z02 1210 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 ZDHHC13Q8IUH4 622 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 LILRA2Q8N149 483 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 PSD4Q8NDX1 1056 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 OR4K17Q8NGC6 315 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 OR4D11Q8NGI4 311 aa11.72□□□□□ -0.53
CLK3-214ENST00000564096 OR5W2Q8NH69 310 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms