RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GPALPP1Q8IXQ4 340 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TMCO5AQ8N6Q1 288 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 ZBTB44Q8NCP5 570 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 FAM71CQ8NEG0 241 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 OR6S1Q8NH40 331 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 OR1L3Q8NH93 324 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 FANK1Q8TC84 345 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 SLC22A8Q8TCC7 542 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TMEM234Q8WY98 164 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TTC9Q92623 222 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 TMCO6Q96DC7 493 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CLIP3Q96DZ5 547 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 VMP1Q96GC9 406 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 COG8Q96MW5 612 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 IL4I1Q96RQ9 567 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 LPAR4Q99677 370 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 CMKLR1Q99788 373 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 ZNF426Q9BUY5 554 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 B3GNT4Q9C0J1 378 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 WDR12Q9GZL7 423 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 SOX17Q9H6I2 414 aaPredicted RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 FBXO8Q9NRD0 319 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 RASSF1Q9NS23 344 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 DNAJB12Q9NXW2 375 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 KLHL3Q9UH77 587 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 GPN3Q9UHW5 284 aaPredicted RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 KLHL21Q9UJP4 597 aa6.95□□□□□ -1.3
VPS39-204ENST00000561818 DIMT1Q9UNQ2 313 aaKnown RBP6.95□□□□□ -1.3
VPS39-204ENST00000561818 PNMA8CA0A1B0GUJ8 204 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 GXYLT2A0PJZ3 443 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CPED1A4D0V7 1026 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SAGE2PA6NJ88 616 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 EFCAB9A8MZ26 197 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ALG1L2C9J202 215 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 D6RAR5 112 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FAM227AF5H4B4 570 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 H3BMQ9 156 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 GTPBP1O00178 669 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 CCRL2O00421 344 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 IMPA2O14732 288 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ZNF264O43296 627 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 KLF4O43474 513 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 HCRTR1O43613 425 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SIGLEC6O43699 453 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 AKAP8O43823 692 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 TMEM127O75204 238 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 BCAS1O75363 584 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 TRIM3O75382 744 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 SLC34A2O95436 690 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 MT-ATP6P00846 226 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 HEXBP07686 556 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 STSP08842 583 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CT62P0C5K7 136 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CT45A8P0DMV1 189 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CT45A9P0DMV2 189 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SAGP10523 405 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 POU2F1P14859 743 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FOLR1P15328 257 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 MAOAP21397 527 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ACP1P24666 158 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 MSX1P28360 303 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 HTR1FP30939 366 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FMO3P31513 532 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CCKBRP32239 447 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 UGT2B10P36537 528 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 POLR2IP36954 125 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 MTNR1AP48039 350 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CLK1P49759 484 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 SEPHS1P49903 392 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ZNF136P52737 540 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 BLVRAP53004 296 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ID2Q02363 134 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PLCXD2Q0VAA5 305 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ST3GAL4Q11206 333 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PPP1R8Q12972 351 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 BNIP3Q12983 259 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 MLLT11Q13015 90 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 MRPL28Q13084 256 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 DCTN2Q13561 401 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 CBFBQ13951 182 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 GINS1Q14691 196 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 LAPTM4AQ15012 233 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 EXOSC7Q15024 291 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 EBPQ15125 230 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 SHBQ15464 509 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 EXT1Q16394 746 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 TIGD6Q17RP2 521 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CT45A2Q5DJT8 189 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SNAP47Q5SQN1 464 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PDZK1Q5T2W1 519 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 GPR107Q5VW38 600 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FOXB2Q5VYV0 432 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FIGNL1Q6PIW4 674 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SMARCD3Q6STE5 483 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 HSDL2Q6YN16 418 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 TMPRSS11AQ6ZMR5 421 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CCDC81Q6ZN84 652 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 USP43Q70EL4 1123 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 LNX2Q8N448 690 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 BCORP1Q8N888 145 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms