RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 C7orf72A4D263 438 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 SCDO00767 359 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 PIP5K1BO14986 540 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 EFNA2O43921 213 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 TRIM13O60858 407 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 SYNGR4O95473 234 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 HMGN2P05204 90 aaKnown RBP10.39□□□□□ -0.75
USP3-220ENST00000561381 LINGO3P0C6S8 592 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 NEFHP12036 1026 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 HPGDP15428 266 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ALDH3A1P30838 453 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 SFTPDP35247 375 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 FOXF1Q12946 379 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 LASP1Q14847 261 aaKnown RBP10.39□□□□□ -0.75
USP3-220ENST00000561381 UGT3A2Q3SY77 523 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ARL13AQ5H913 290 aaPredicted RBP10.39□□□□□ -0.75
USP3-220ENST00000561381 HBMQ6B0K9 141 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 PRSS57Q6UWY2 283 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 C20orf204Q6ZNR8 217 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 RNF165Q6ZSG1 346 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 WFDC8Q8IUA0 241 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 DDIASQ8IXT1 998 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 CNPY4Q8N129 248 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 OR6Y1Q8NGX8 325 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 B4GALNT2Q8NHY0 566 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 AGR3Q8TD06 166 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ACTRT2Q8TDY3 377 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 TWIST2Q8WVJ9 160 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 IGFBPL1Q8WX77 278 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 OSTF1Q92882 214 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 CDS1Q92903 461 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 CAVIN3Q969G5 261 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ZNF524Q96C55 264 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 MECRQ9BV79 373 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 SRXN1Q9BYN0 137 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ACTR6Q9GZN1 396 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 IQCGQ9H095 443 aaKnown RBP10.39□□□□□ -0.75
USP3-220ENST00000561381 UBQLN4Q9NRR5 601 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 ZCCHC3Q9NUD5 404 aaKnown RBP10.39□□□□□ -0.75
USP3-220ENST00000561381 SLC17A7Q9P2U7 560 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 STOML1Q9UBI4 398 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 KCNE3Q9Y6H6 103 aa10.39□□□□□ -0.75
USP3-220ENST00000561381 DNHD1Q96M86 4753 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 FREM1Q5H8C1 2179 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 CHEK2O96017 543 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 LAMP1P11279 417 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 NID1P14543 1247 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 AGTR1P30556 359 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 ARRB2P32121 409 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 PTH2RP49190 550 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 CARD18P57730 90 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 POU6F2P78424 691 aaPredicted RBP10.38□□□□□ -0.75
USP3-220ENST00000561381 ZNF117Q03924 483 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 ZNF844Q08AG5 666 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TSC22D1Q15714 1073 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TOMM34Q15785 309 aaPredicted RBP10.38□□□□□ -0.75
USP3-220ENST00000561381 NDUFAF6Q330K2 333 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 BEX5Q5H9J7 111 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP3-220ENST00000561381 ALKBH2Q6NS38 261 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 ZCCHC12Q6PEW1 402 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 CBLN3Q6UW01 205 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 LRIG3Q6UXM1 1119 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 ZNF704Q6ZNC4 412 aaPredicted RBP10.38□□□□□ -0.75
USP3-220ENST00000561381 ESPNLQ6ZVH7 1005 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TRABD2AQ86V40 505 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 LILRA2Q8N149 483 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 OR2W6PQ8NHA6 318 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 PHOSPHO1Q8TCT1 267 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 ABHD3Q8WU67 409 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 CHMP6Q96FZ7 201 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 PLPPR2Q96GM1 343 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 C3orf30Q96M34 536 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 KLHL15Q96M94 604 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TRMOQ9BU70 441 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 BTBD2Q9BX70 525 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 GSX2Q9BZM3 304 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 PAQR5Q9NXK6 330 aaPredicted RBP10.38□□□□□ -0.75
USP3-220ENST00000561381 ATP6V1HQ9UI12 483 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TMED5Q9Y3A6 229 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TRAF6Q9Y4K3 522 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 SNX8Q9Y5X2 465 aa10.38□□□□□ -0.75
USP3-220ENST00000561381 TLN2Q9Y4G6 2542 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 NSD1Q96L73 2696 aaPredicted RBP10.37□□□□□ -0.75
USP3-220ENST00000561381 A0A1W2PQD3 144 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 TLDC2A0PJX2 215 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 SCAMP2O15127 329 aaKnown RBP10.37□□□□□ -0.75
USP3-220ENST00000561381 PEX11AO75192 247 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 TUBBP07437 444 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 FGF4P08620 206 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PPP3CBP16298 524 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 ME2P23368 584 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PCSK6P29122 969 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 LCN1P31025 176 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 ASMTP46597 345 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 SERPINB4P48594 390 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PTGR1Q14914 329 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 MLC1Q15049 377 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 ZNF239Q16600 458 aaKnown RBP10.37□□□□□ -0.75
USP3-220ENST00000561381 CDC73Q6P1J9 531 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms