RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LRRN3Q9H3W5 708 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SLC35C2Q9NQQ7 365 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 DLL4Q9NR61 685 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 MARK1Q9P0L2 795 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 WDR87Q6ZQQ6 2873 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NPIPB8E9PQR5 432 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SHOXO15266 292 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PCDH8O95206 1070 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 CTSLP07711 333 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 LIPCP11150 499 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 APEHP13798 732 aaKnown RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 NDUFV2P19404 249 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 KHKP50053 298 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ST8SIA6P61647 398 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SIM1P81133 766 aaPredicted RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 C17orf99Q6UX52 265 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PRSS42Q7Z5A4 293 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 KCTD20Q7Z5Y7 419 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 RFLNBQ8N5W9 214 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 TRAM1L1Q8N609 369 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 FAM181AQ8N9Y4 354 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 VN1R2Q8NFZ6 395 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 OR13C2Q8NGS9 318 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ABHD4Q8TB40 342 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 FANK1Q8TC84 345 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SNX33Q8WV41 574 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 IGSF21Q96ID5 467 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SLC46A2Q9BY10 475 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SYNPO2LQ9H987 977 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 A4GALTQ9NPC4 353 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 KCNK6Q9Y257 313 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 HEATR5BQ9P2D3 2071 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ALPK3Q96L96 1907 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 CDHR4A6H8M9 788 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 TRIM3O75382 744 aaPredicted RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 FBXO45P0C2W1 286 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 CERS1P27544 350 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ANXA11P50995 505 aaKnown RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 ERVFC1P60507 584 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 DUSP2Q05923 314 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 NDUFA9Q16795 377 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 FAM74A1Q5RGS3 127 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 C1orf94Q6P1W5 598 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 RD3Q7Z3Z2 195 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SLC51BQ86UW2 128 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 MORN4Q8NDC4 146 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 RGMAQ96B86 450 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 TIFAQ96CG3 184 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ZNF689Q96CS4 500 aaPredicted RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 SLC41A3Q96GZ6 507 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 OR52D1Q9H346 318 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 FKRPQ9H9S5 495 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PFDN2Q9UHV9 154 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ABT1Q9ULW3 272 aaKnown RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 ATG4BQ9Y4P1 393 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SGK494L7N484 410 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 RAD1O60671 282 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PPP1R3DO95685 299 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 GLULP15104 373 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 SELPP16109 830 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ATF1P18846 271 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PRLHRP49683 370 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PDE7AQ13946 482 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 COL28A1Q2UY09 1125 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ARHGAP15Q53QZ3 475 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 HENMT1Q5T8I9 393 aaKnown RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 FIGNL1Q6PIW4 674 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 NUP43Q8NFH3 380 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 OR4K13Q8NH42 304 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 THAP4Q8WY91 577 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 OSTF1Q92882 214 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 AMDHD1Q96NU7 426 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 ZNF436Q9C0F3 470 aaPredicted RBP10.57□□□□□ -0.72
LDLR-208ENST00000558518 C20orf85Q9H1P6 137 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 UBQLN3Q9H347 655 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 GHITMQ9H3K2 345 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 NT5DC2Q9H857 520 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 CYSLTR2Q9NS75 346 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 PRKAG2Q9UGJ0 569 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 NUBP2Q9Y5Y2 271 aa10.57□□□□□ -0.72
LDLR-208ENST00000558518 IRGMA1A4Y4 181 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 EPPINO95925 133 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FAM157BP0CG42 384 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 HK1P19367 917 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 M6PRP20645 277 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FGF9P31371 208 aaPredicted RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 TSPAN31Q12999 210 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CAMK2DQ13557 499 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 EOGTQ5NDL2 527 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 ZDHHC20Q5W0Z9 365 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 PYHIN1Q6K0P9 492 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FAM198BQ6UWH4 519 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 RNF44Q7L0R7 432 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 PARS2Q7L3T8 475 aaKnown RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 OAFQ86UD1 273 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 SLC44A3Q8N4M1 653 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 SLC16A11Q8NCK7 471 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 LRIG1Q96JA1 1093 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 GPR137Q96N19 417 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 MED18Q9BUE0 208 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms